Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RNU6-346P-201ENST00000516288 111 ntBASIC3.52□□□□□ -1.85
RNF4P78317 RNU1-45P-201ENST00000517191 141 ntBASIC3.52□□□□□ -1.85
RNF4P78317 RNU2-12P-201ENST00000517216 168 ntBASIC3.52□□□□□ -1.85
RNF4P78317 MTND5P41-201ENST00000517498 206 ntBASIC3.52□□□□□ -1.85
RNF4P78317 AC093331.1-201ENST00000521474 169 ntBASIC3.52□□□□□ -1.85
RNF4P78317 AP005660.1-201ENST00000522972 293 ntBASIC3.52□□□□□ -1.85
RNF4P78317 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.52□□□□□ -1.85
RNF4P78317 AC034105.4-201ENST00000568304 277 ntBASIC3.52□□□□□ -1.85
RNF4P78317 AC006380.1-201ENST00000603598 186 ntBASIC3.52□□□□□ -1.85
RNF4P78317 SNORD11B-201ENST00000607707 90 ntBASIC3.52□□□□□ -1.85
RNF4P78317 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.52□□□□□ -1.85
RNF4P78317 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
RNF4P78317 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
RNF4P78317 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
RNF4P78317 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.51□□□□□ -1.85
RNF4P78317 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.51□□□□□ -1.85
RNF4P78317 SNORA12-201ENST00000391162 147 ntBASIC3.51□□□□□ -1.85
RNF4P78317 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.51□□□□□ -1.85
RNF4P78317 RNU6ATAC-201ENST00000408749 126 ntBASIC3.51□□□□□ -1.85
RNF4P78317 RNA5SP504-201ENST00000410676 117 ntBASIC3.51□□□□□ -1.85
RNF4P78317 AL445584.1-201ENST00000431451 330 ntBASIC3.51□□□□□ -1.85
RNF4P78317 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
RNF4P78317 RN7SL542P-201ENST00000467147 294 ntBASIC3.51□□□□□ -1.85
RNF4P78317 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.51□□□□□ -1.85
RNF4P78317 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.51□□□□□ -1.85
RNF4P78317 HSPE1P18-201ENST00000517602 280 ntBASIC3.51□□□□□ -1.85
RNF4P78317 AC023632.4-201ENST00000517783 191 ntBASIC3.51□□□□□ -1.85
RNF4P78317 MRPS18CP4-201ENST00000535821 231 ntBASIC3.51□□□□□ -1.85
RNF4P78317 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.51□□□□□ -1.85
RNF4P78317 AL137849.1-201ENST00000604767 169 ntBASIC3.51□□□□□ -1.85
RNF4P78317 TCL6_2.1-201ENST00000615162 119 ntBASIC3.51□□□□□ -1.85
RNF4P78317 AC034229.5-201ENST00000624258 185 ntBASIC3.51□□□□□ -1.85
RNF4P78317 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.51□□□□□ -1.85
RNF4P78317 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
RNF4P78317 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
RNF4P78317 RNU6-653P-201ENST00000363074 106 ntBASIC3.5□□□□□ -1.85
RNF4P78317 RNU1-57P-201ENST00000384491 166 ntBASIC3.5□□□□□ -1.85
RNF4P78317 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
RNF4P78317 AL357139.1-201ENST00000407792 426 ntBASIC3.5□□□□□ -1.85
RNF4P78317 U3.40-201ENST00000408706 208 ntBASIC3.5□□□□□ -1.85
RNF4P78317 AL139247.1-201ENST00000422768 325 ntBASIC3.5□□□□□ -1.85
RNF4P78317 RPS3P1-201ENST00000456781 192 ntBASIC3.5□□□□□ -1.85
RNF4P78317 U3.44-201ENST00000458938 192 ntBASIC3.5□□□□□ -1.85
RNF4P78317 AL133162.1-201ENST00000463228 453 ntBASIC3.5□□□□□ -1.85
RNF4P78317 RPL36AP48-201ENST00000485521 314 ntBASIC3.5□□□□□ -1.85
RNF4P78317 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
RNF4P78317 RAC1P2-201ENST00000511164 579 ntBASIC3.5□□□□□ -1.85
RNF4P78317 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.5□□□□□ -1.85
RNF4P78317 MIR5187-201ENST00000583479 76 ntBASIC3.5□□□□□ -1.85
RNF4P78317 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.5□□□□□ -1.85
RNF4P78317 SNORA62.6-201ENST00000606322 83 ntBASIC3.5□□□□□ -1.85
RNF4P78317 RNU1-30P-201ENST00000606575 163 ntBASIC3.5□□□□□ -1.85
RNF4P78317 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.5□□□□□ -1.85
RNF4P78317 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
RNF4P78317 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
RNF4P78317 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
RNF4P78317 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
RNF4P78317 RNA5SP295-201ENST00000362655 121 ntBASIC3.49□□□□□ -1.85
RNF4P78317 U8.11-201ENST00000384699 133 ntBASIC3.49□□□□□ -1.85
RNF4P78317 U8.12-201ENST00000384701 133 ntBASIC3.49□□□□□ -1.85
RNF4P78317 MIR767-201ENST00000390228 109 ntBASIC3.49□□□□□ -1.85
RNF4P78317 AL500522.2-201ENST00000448562 343 ntBASIC3.49□□□□□ -1.85
RNF4P78317 U8.18-201ENST00000459285 133 ntBASIC3.49□□□□□ -1.85
RNF4P78317 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.49□□□□□ -1.85
RNF4P78317 RNA5SP208-201ENST00000516156 78 ntBASIC3.49□□□□□ -1.85
RNF4P78317 RNU6-436P-201ENST00000516171 114 ntBASIC3.49□□□□□ -1.85
RNF4P78317 RNU6-344P-201ENST00000516635 111 ntBASIC3.49□□□□□ -1.85
RNF4P78317 RNA5SP143-201ENST00000516936 115 ntBASIC3.49□□□□□ -1.85
RNF4P78317 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.49□□□□□ -1.85
RNF4P78317 AC099778.2-201ENST00000610904 211 ntBASIC3.49□□□□□ -1.85
RNF4P78317 AC084757.4-201ENST00000616350 526 ntBASIC3.49□□□□□ -1.85
RNF4P78317 SNORA50A-202ENST00000629536 136 ntBASIC3.49□□□□□ -1.85
RNF4P78317 AC068205.3-201ENST00000636385 468 ntBASIC3.49□□□□□ -1.85
RNF4P78317 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
RNF4P78317 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
RNF4P78317 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
RNF4P78317 AC007256.1-201ENST00000392253 2765 ntBASIC3.48□□□□□ -1.85
RNF4P78317 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
RNF4P78317 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.48□□□□□ -1.85
RNF4P78317 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.48□□□□□ -1.85
RNF4P78317 Y_RNA.435-201ENST00000384095 112 ntBASIC3.48□□□□□ -1.85
RNF4P78317 Z98742.2-201ENST00000431564 187 ntBASIC3.48□□□□□ -1.85
RNF4P78317 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
RNF4P78317 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.48□□□□□ -1.85
RNF4P78317 SNORA31.1-201ENST00000515993 133 ntBASIC3.48□□□□□ -1.85
RNF4P78317 SNORA31.5-201ENST00000516190 133 ntBASIC3.48□□□□□ -1.85
RNF4P78317 RNU2-44P-201ENST00000516795 194 ntBASIC3.48□□□□□ -1.85
RNF4P78317 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.48□□□□□ -1.85
RNF4P78317 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.48□□□□□ -1.85
RNF4P78317 MIR5692C2-201ENST00000577959 77 ntBASIC3.48□□□□□ -1.85
RNF4P78317 MIR3144-201ENST00000579460 79 ntBASIC3.48□□□□□ -1.85
RNF4P78317 MIR486-1-201ENST00000612171 68 ntBASIC3.48□□□□□ -1.85
RNF4P78317 AL121772.2-201ENST00000614331 297 ntBASIC3.48□□□□□ -1.85
RNF4P78317 MAPK10-373ENST00000641983 6772 ntBASIC3.48□□□□□ -1.85
RNF4P78317 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
RNF4P78317 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
RNF4P78317 AC069528.2-201ENST00000624849 1991 ntBASIC3.47□□□□□ -1.85
RNF4P78317 AL359854.1-201ENST00000614203 1594 ntBASIC3.47□□□□□ -1.85
RNF4P78317 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
RNF4P78317 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms