Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DOAP06340 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HLA-DOAP06340 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DOAP06340 AC022336.2-201ENST00000568966 2538 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
HLA-DOAP06340 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DOAP06340 Y_RNA.16-201ENST00000362421 102 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 RNU6-1280P-201ENST00000365211 107 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.2□□□□□ -1.9
HLA-DOAP06340 RNU6-1203P-201ENST00000410703 110 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 RNU2-25P-201ENST00000411041 191 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 AC009296.1-201ENST00000443146 155 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 snoU13.30-201ENST00000458951 104 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 RPL39P38-201ENST00000467018 153 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.2□□□□□ -1.9
HLA-DOAP06340 RNU6-111P-201ENST00000517179 105 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 AC022868.1-201ENST00000517767 391 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 AP002770.2-201ENST00000543613 532 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 AC021739.1-201ENST00000559631 174 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 MIR3605-201ENST00000583214 100 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 AC068831.7-201ENST00000616954 363 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.2□□□□□ -1.9
HLA-DOAP06340 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HLA-DOAP06340 AC093831.2-201ENST00000624393 3427 ntBASIC3.2□□□□□ -1.9
HLA-DOAP06340 ADAM3A-203ENST00000461344 2157 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DOAP06340 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DOAP06340 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 RNU4-82P-201ENST00000362443 140 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 SNORD27-201ENST00000363981 72 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 Y_RNA.237-201ENST00000364439 102 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 SNORD32A-201ENST00000364805 84 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 RNU6-926P-201ENST00000384075 107 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 RNU6-968P-201ENST00000384076 107 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 SNORA36A-201ENST00000384221 132 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 MIR181A2-201ENST00000384863 110 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 MIR32-201ENST00000384965 70 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 AL079342.1-201ENST00000401460 267 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 RNA5SP38-201ENST00000410750 119 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DOAP06340 SDAD1P3-201ENST00000427380 333 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 HMGN2P10-201ENST00000448085 265 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 AL353705.4-201ENST00000449661 238 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 MRPL42P6-201ENST00000486397 371 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 ANXA2P1-201ENST00000505539 926 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 RNU6-1023P-201ENST00000516137 106 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 SNORA70.14-201ENST00000516205 110 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 SNORA9.3-201ENST00000516383 129 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DOAP06340 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DOAP06340 RPL23AP88-201ENST00000605759 454 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 SNORA43.4-201ENST00000629559 138 ntBASIC3.19□□□□□ -1.9
HLA-DOAP06340 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DOAP06340 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HLA-DOAP06340 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 RNU6-212P-201ENST00000362642 104 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 SNORA20.1-201ENST00000364790 130 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 U3.13-201ENST00000364804 214 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 Y_RNA.539-201ENST00000384635 107 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 Y_RNA.552-201ENST00000384665 112 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 RNA5SP252-201ENST00000391131 119 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 AP000567.1-201ENST00000406413 156 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 MTCYBP2-201ENST00000407745 171 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 AC023141.4-201ENST00000412031 328 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 AL591043.1-201ENST00000432461 424 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 AC112220.1-201ENST00000434628 355 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 AC090525.1-201ENST00000479116 478 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 DEFB108E-201ENST00000524692 240 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 MIR4300-201ENST00000581016 96 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 AL355877.2-201ENST00000603670 358 ntBASIC3.18□□□□□ -1.9
HLA-DOAP06340 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
HLA-DOAP06340 RNU4-9P-201ENST00000364951 139 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 RNU6-937P-201ENST00000384325 106 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 RNU6-102P-201ENST00000384485 104 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 Y_RNA.518-201ENST00000384552 113 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 SNORD115-46-201ENST00000390982 71 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 AL714022.1-201ENST00000439897 151 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 AC007969.2-201ENST00000441891 191 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 RPS26P21-201ENST00000475397 348 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 Y_RNA.713-201ENST00000517013 96 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 AC090617.3-201ENST00000573670 475 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 MIR6817-201ENST00000615588 66 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 AC240442.1-201ENST00000616055 283 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 SCARNA4-201ENST00000629045 128 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 GABRG2-229ENST00000641017 3628 ntBASIC3.17□□□□□ -1.9
HLA-DOAP06340 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.17□□□□□ -1.9
HLA-DOAP06340 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HLA-DOAP06340 RNA5SP361-201ENST00000362686 118 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms