Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SNORD114-30-201ENST00000364448 72 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 Y_RNA.534-201ENST00000384599 112 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
COL3A1P02461 RNA5SP494-201ENST00000410653 129 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.08□□□□□ -1.92
COL3A1P02461 MTCO3P29-201ENST00000432119 779 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 USP9YP7-201ENST00000436723 430 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL3A1P02461 USP9YP32-201ENST00000452432 430 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.08□□□□□ -1.92
COL3A1P02461 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.08□□□□□ -1.92
COL3A1P02461 MIR892C-201ENST00000516410 77 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 AC093023.1-201ENST00000547375 507 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 MIR1273C-201ENST00000578669 77 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 MIR8076-201ENST00000611401 83 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 MIR6715B-201ENST00000637172 77 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.08□□□□□ -1.92
COL3A1P02461 AP001148.1-201ENST00000624124 2359 ntBASIC3.08□□□□□ -1.92
COL3A1P02461 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
COL3A1P02461 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
COL3A1P02461 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.07□□□□□ -1.92
COL3A1P02461 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL3A1P02461 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.07□□□□□ -1.92
COL3A1P02461 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL3A1P02461 RNU6-1266P-201ENST00000362794 105 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 U8.2-201ENST00000363156 134 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 RNU6-1249P-201ENST00000363237 111 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 Y_RNA.199-201ENST00000364014 102 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 RNU6-76P-201ENST00000384060 104 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 RNU6-178P-201ENST00000384631 104 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 MIR301A-201ENST00000385261 86 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 RNU6-482P-201ENST00000391068 107 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 PCNPP3-201ENST00000393579 471 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 EI24P1-201ENST00000416584 867 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 AL138785.1-201ENST00000425821 331 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 AL591043.1-201ENST00000432461 424 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 RPS15AP28-201ENST00000435088 386 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 PIGFP3-201ENST00000441918 722 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.07□□□□□ -1.92
COL3A1P02461 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.07□□□□□ -1.92
COL3A1P02461 RN7SKP210-201ENST00000459176 261 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 RPL30P10-201ENST00000488148 337 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 MIR2355-201ENST00000517199 87 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.07□□□□□ -1.92
COL3A1P02461 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.07□□□□□ -1.92
COL3A1P02461 AL590705.4-201ENST00000532209 134 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 AL442163.3-201ENST00000554110 156 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 AC015712.3-201ENST00000559380 164 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL3A1P02461 MIR4716-201ENST00000579628 84 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 Y_RNA.772-201ENST00000606692 102 ntBASIC3.07□□□□□ -1.92
COL3A1P02461 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
COL3A1P02461 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.07□□□□□ -1.92
COL3A1P02461 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL3A1P02461 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
COL3A1P02461 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL3A1P02461 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.06□□□□□ -1.92
COL3A1P02461 UBE2L2-201ENST00000254302 429 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 MIR6073-201ENST00000352083 89 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 Y_RNA.122-201ENST00000363331 96 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 RNU6-263P-201ENST00000363811 107 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 RNU6-125P-201ENST00000384505 107 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 RNA5SP247-201ENST00000411181 105 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 MTND3P9-201ENST00000429526 346 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 AC092573.2-201ENST00000434546 243 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
COL3A1P02461 RNU7-120P-201ENST00000459334 63 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 AP002392.1-201ENST00000537692 208 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.06□□□□□ -1.92
COL3A1P02461 DEFB122-202ENST00000569013 197 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 RMST_4.1-201ENST00000616886 107 ntBASIC3.06□□□□□ -1.92
COL3A1P02461 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
COL3A1P02461 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL3A1P02461 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
COL3A1P02461 RNU6-1159P-201ENST00000362933 107 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 RNA5SP240-201ENST00000365355 128 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 Y_RNA.506-201ENST00000384494 102 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 AL033519.2-201ENST00000403958 392 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 RNU6-712P-201ENST00000410558 100 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.05□□□□□ -1.92
COL3A1P02461 SSXP9-201ENST00000417503 292 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.05□□□□□ -1.92
COL3A1P02461 AC098831.1-201ENST00000440661 216 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 RPL26P6-201ENST00000440913 438 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 TMSB4XP3-201ENST00000445144 114 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 AP000705.1-201ENST00000454567 350 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 AL359273.1-201ENST00000510918 627 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 SERF1AP1-201ENST00000514575 187 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.05□□□□□ -1.92
COL3A1P02461 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.05□□□□□ -1.92
COL3A1P02461 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.05□□□□□ -1.92
COL3A1P02461 U73479.1-201ENST00000618062 168 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.05□□□□□ -1.92
COL3A1P02461 Z99571.1-201ENST00000636677 394 ntBASIC3.05□□□□□ -1.92
COL3A1P02461 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
COL3A1P02461 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.05□□□□□ -1.92
COL3A1P02461 RNU6-37P-201ENST00000362692 107 ntBASIC3.04□□□□□ -1.92
COL3A1P02461 Y_RNA.143-201ENST00000363520 106 ntBASIC3.04□□□□□ -1.92
COL3A1P02461 RNU6-11P-201ENST00000364234 107 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms