Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 AC067747.1-201ENST00000608026 250 ntBASIC1.99□□□□□ -2.09
NKX6-3A6NJ46 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.99□□□□□ -2.09
NKX6-3A6NJ46 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.99□□□□□ -2.09
NKX6-3A6NJ46 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
NKX6-3A6NJ46 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.99□□□□□ -2.09
NKX6-3A6NJ46 AC233981.2-201ENST00000611524 1614 ntBASIC1.99□□□□□ -2.09
NKX6-3A6NJ46 AC016717.2-201ENST00000609089 5141 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 Y_RNA.48-201ENST00000362710 103 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 RNU6-301P-201ENST00000384277 107 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 RNU6-1093P-201ENST00000391194 107 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 FGF7P8-201ENST00000402994 292 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 U3.40-201ENST00000408706 208 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 RNA5SP494-201ENST00000410653 129 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AC138393.2-201ENST00000414742 246 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 EIF1AXP1-201ENST00000419267 435 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 PDCL2P1-201ENST00000419302 352 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AC012306.1-201ENST00000423267 114 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AC090255.1-201ENST00000495779 349 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 RN7SL636P-201ENST00000497504 294 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AC026436.1-201ENST00000510537 270 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 MIR514B-201ENST00000516774 80 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 MIR3126-201ENST00000577443 74 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 U4atac.1-201ENST00000618345 95 ntBASIC1.98□□□□□ -2.09
NKX6-3A6NJ46 AC245060.5-201ENST00000610778 3293 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 SNORD50.1-201ENST00000362987 71 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 Y_RNA.303-201ENST00000364998 94 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 SNORA26.3-201ENST00000391119 136 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 MIR1294-201ENST00000408503 142 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 AC098614.3-201ENST00000438957 440 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 AC107399.1-201ENST00000451226 265 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 RN7SL429P-201ENST00000479090 223 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 AC107032.1-201ENST00000485945 480 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 RN7SL489P-201ENST00000486185 223 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 RN7SL327P-201ENST00000488659 223 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 AC005741.1-201ENST00000511094 432 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 CYCSP26-201ENST00000534107 320 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 MIR4435-1-201ENST00000582552 80 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 MIR4273-201ENST00000582824 84 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 AL022345.1-201ENST00000607292 135 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 RN7SL853P-201ENST00000617250 223 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 DUXAP9-208ENST00000622815 614 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 MIR1248-201ENST00000629190 106 ntBASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
NKX6-3A6NJ46 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 AC131280.1-202ENST00000624067 4211 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 SNORD81.2-201ENST00000365153 76 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 RNU6-1286P-201ENST00000383871 107 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 RNU4-52P-201ENST00000384209 138 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 MIR487A-201ENST00000385009 80 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 MIR548K-201ENST00000408406 116 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 RNU6-1304P-201ENST00000411374 106 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 AC074085.1-201ENST00000413598 418 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 HMGB1P18-201ENST00000438801 619 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 DAP3P1-201ENST00000441522 278 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 AF186996.7-201ENST00000492781 209 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 HMGN1P12-201ENST00000499125 195 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 AC046134.1-201ENST00000514454 666 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 RNU6-991P-201ENST00000516168 107 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 SNORA20.3-201ENST00000516880 132 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 AC034114.1-201ENST00000520293 285 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 AP002770.2-201ENST00000543613 532 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 CYP4A27P-201ENST00000567218 190 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 FGF7P1-201ENST00000582820 288 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 AC243960.4-201ENST00000600532 288 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 AC025754.2-201ENST00000606491 432 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 PCGEM1.1-201ENST00000613431 131 ntBASIC1.96□□□□□ -2.1
NKX6-3A6NJ46 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
NKX6-3A6NJ46 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
NKX6-3A6NJ46 U3.9-201ENST00000363823 204 ntBASIC1.95□□□□□ -2.1
NKX6-3A6NJ46 RNU1-51P-201ENST00000365345 176 ntBASIC1.95□□□□□ -2.1
NKX6-3A6NJ46 RNU6-784P-201ENST00000384330 106 ntBASIC1.95□□□□□ -2.1
NKX6-3A6NJ46 MTCYBP2-201ENST00000407745 171 ntBASIC1.95□□□□□ -2.1
NKX6-3A6NJ46 RN7SKP32-201ENST00000410167 303 ntBASIC1.95□□□□□ -2.1
NKX6-3A6NJ46 RPL37P10-201ENST00000412884 288 ntBASIC1.95□□□□□ -2.1
NKX6-3A6NJ46 Z82188.1-201ENST00000436709 154 ntBASIC1.95□□□□□ -2.1
NKX6-3A6NJ46 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.95□□□□□ -2.1
NKX6-3A6NJ46 AC087477.1-201ENST00000465747 340 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 136.6 ms