Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 RNU6-44P-201ENST00000384045 107 ntBASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 SNORA75.5-201ENST00000391291 81 ntBASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 AC097463.2-201ENST00000421074 142 ntBASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 RNA5SP519-201ENST00000516480 119 ntBASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 AC008739.3-201ENST00000603262 127 ntBASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 AP003357.1-201ENST00000604497 148 ntBASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 Six3os1_7.1-201ENST00000621512 201 ntBASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 AC140113.4-201ENST00000622087 222 ntBASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 AC039056.2-201ENST00000622261 511 ntBASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.51□□□□□ -1.69
LIMD1Q9UGP4 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 RNU6-1056P-201ENST00000383996 107 ntBASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 RNU6-1323P-201ENST00000384025 107 ntBASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 RNU6-768P-201ENST00000384683 107 ntBASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 SNORA71B-202ENST00000439232 272 ntBASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 AC092991.1-201ENST00000477176 376 ntBASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 AC117454.1-201ENST00000491120 168 ntBASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 AC000403.1-201ENST00000613696 3585 ntBASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
LIMD1Q9UGP4 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 RNU1-105P-201ENST00000363470 161 ntBASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 RNU6-1180P-201ENST00000364935 107 ntBASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 Y_RNA.563-201ENST00000384707 108 ntBASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 AC010154.1-201ENST00000425857 269 ntBASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 RNA5SP309-201ENST00000516670 106 ntBASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 MIR4753-201ENST00000585119 83 ntBASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIMD1Q9UGP4 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 RNU1-14P-201ENST00000362759 152 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 RNU1-20P-201ENST00000363314 162 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 RNU6-525P-201ENST00000363685 104 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 MIR1283-1-201ENST00000408494 87 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 EIF4EP4-201ENST00000424916 578 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 AL157831.1-201ENST00000426134 473 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 PPIAP15-201ENST00000479662 484 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 RN7SL812P-201ENST00000493791 279 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 AC099522.1-202ENST00000514718 367 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 RNU6-1337P-201ENST00000516525 95 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 RNU6-1098P-201ENST00000516772 96 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 AL606490.9-201ENST00000603331 271 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 AC012640.5-201ENST00000623897 319 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 AL133243.3-201ENST00000617415 3004 ntBASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.48□□□□□ -1.69
LIMD1Q9UGP4 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 CENPCP1-201ENST00000533085 2578 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms