Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC068944.2-201ENST00000610373 403 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 AC099654.12-201ENST00000639868 649 ntBASIC1.94□□□□□ -2.1
VPS54Q9P1Q0 Y_RNA.167-201ENST00000363735 109 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 MTCO2P3-201ENST00000442543 421 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 MTCO2P7-201ENST00000446518 666 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AC083904.1-201ENST00000487828 231 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 Y_RNA.654-201ENST00000497848 106 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AC091885.1-201ENST00000506658 268 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 RNU6-506P-201ENST00000516553 94 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AC104576.1-201ENST00000524225 88 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AC018630.3-201ENST00000542637 96 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 TRAV32-201ENST00000553993 340 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 HMGB1P33-201ENST00000563485 527 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AC004492.1-201ENST00000607036 742 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AC015540.1-201ENST00000615828 501 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AL359314.1-201ENST00000616913 261 ntBASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
VPS54Q9P1Q0 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 RNU6-142P-201ENST00000384019 107 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 Y_RNA.504-201ENST00000384481 104 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 MIR514A2-201ENST00000385131 88 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 MIR514A3-201ENST00000385132 88 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AL590002.1-201ENST00000406554 418 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 RNA5SP450-201ENST00000411206 102 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 RPL23AP95-201ENST00000426806 265 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AC078809.1-201ENST00000427601 140 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 RNU6-1208P-201ENST00000459588 107 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 HMGB3P17-201ENST00000504195 649 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AC087854.1-201ENST00000519706 414 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 MIR3136-201ENST00000583498 78 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AC010525.2-201ENST00000590920 195 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AC078795.3-201ENST00000602913 472 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AL109918.3-201ENST00000603072 338 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AL162413.1-201ENST00000603198 110 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 AL078605.1-201ENST00000603529 500 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 RNU6-89P-201ENST00000606519 100 ntBASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
VPS54Q9P1Q0 OR4G1P-203ENST00000641984 1631 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 Y_RNA.38-201ENST00000362617 102 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 RNU6-623P-201ENST00000363143 105 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 SNORA36A-201ENST00000384221 132 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 RNU6-1106P-201ENST00000390845 107 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 RNU6-908P-201ENST00000410160 94 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 RN7SKP61-201ENST00000410642 295 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 CBX3P6-201ENST00000430257 527 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AL133396.1-201ENST00000432048 687 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AL591806.2-201ENST00000433122 173 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AL353689.1-201ENST00000438895 199 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 SEPT14P3-201ENST00000439401 183 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AL732372.2-207ENST00000445840 183 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 SEPT14P2-201ENST00000453405 183 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 RNU6-1037P-201ENST00000459571 107 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 PTP4A1P4-201ENST00000512479 322 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 SEPT14P4-201ENST00000513445 186 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 SNORA19.2-201ENST00000516013 114 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 SNORA25.15-201ENST00000516487 89 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 FO082796.1-201ENST00000523795 183 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AC012493.3-201ENST00000604494 112 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AL450472.1-202ENST00000637286 180 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 AP000560.1-201ENST00000624150 1937 ntBASIC1.91□□□□□ -2.1
VPS54Q9P1Q0 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
VPS54Q9P1Q0 MTND4P23-201ENST00000447723 1363 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 RNU6-1090P-201ENST00000364065 94 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 Y_RNA.231-201ENST00000364358 102 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 SNORD32B-201ENST00000364460 84 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 RNU6-1329P-201ENST00000365664 107 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 BTF3L4P2-201ENST00000392798 346 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 Y_RNA.615-201ENST00000410769 117 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 RPL23AP3-201ENST00000453844 468 ntBASIC1.9□□□□□ -2.11
VPS54Q9P1Q0 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms