Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MIR5697-201ENST00000578045 78 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 AC008521.1-201ENST00000587471 187 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 AL031775.1-201ENST00000607014 887 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC1.04□□□□□ -2.24
USP42Q9H9J4 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
USP42Q9H9J4 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.04□□□□□ -2.24
USP42Q9H9J4 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 AL078595.3-201ENST00000623815 1166 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 AL157786.1-207ENST00000627771 695 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 SNORD98-201ENST00000636377 67 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 AC009541.1-201ENST00000438279 2662 ntBASIC1.04□□□□□ -2.24
USP42Q9H9J4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
USP42Q9H9J4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
USP42Q9H9J4 AC010615.1-201ENST00000594254 1764 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
USP42Q9H9J4 MIR302D-201ENST00000362275 68 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 RNU5F-6P-201ENST00000362979 116 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 SNORA22-201ENST00000383907 134 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 RNU6-1065P-201ENST00000384513 106 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 SNORA22C-201ENST00000384614 134 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 Y_RNA.608-201ENST00000410647 95 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 AC137499.1-201ENST00000427602 88 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 AC112204.1-201ENST00000502591 103 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 MTND3P3-201ENST00000505004 126 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.03□□□□□ -2.24
USP42Q9H9J4 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC1.03□□□□□ -2.24
USP42Q9H9J4 MTCO3P28-201ENST00000513351 515 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 RNU6-1220P-201ENST00000517126 108 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 AC012414.6-201ENST00000568241 401 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 AC018889.1-201ENST00000605372 397 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
USP42Q9H9J4 MIR8065-201ENST00000620577 100 ntBASIC1.03□□□□□ -2.24
USP42Q9H9J4 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.02□□□□□ -2.25
USP42Q9H9J4 MTND5P9-201ENST00000503854 1755 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.02□□□□□ -2.25
USP42Q9H9J4 RNU6-61P-201ENST00000365528 109 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 MIR558-201ENST00000384920 94 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 AC106883.1-201ENST00000418805 562 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC1.02□□□□□ -2.25
USP42Q9H9J4 AL365184.2-201ENST00000431139 435 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
USP42Q9H9J4 AC108078.1-201ENST00000508073 725 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 RNU6-351P-201ENST00000516097 100 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 RNA5SP437-201ENST00000517249 129 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.02□□□□□ -2.25
USP42Q9H9J4 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.02□□□□□ -2.25
USP42Q9H9J4 HMGN1P30-201ENST00000589286 268 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 AC073539.2-201ENST00000597113 165 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 AC069114.2-201ENST00000604699 304 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 RNU6-87P-201ENST00000607561 108 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 AC022306.3-201ENST00000619930 550 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 AC007671.2-201ENST00000637344 619 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 AL159152.1-201ENST00000635019 2587 ntBASIC1.02□□□□□ -2.25
USP42Q9H9J4 AC106754.1-201ENST00000562632 1513 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 RNU6-862P-201ENST00000362804 105 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 RNU2-3P-201ENST00000410144 191 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 RNU2-39P-201ENST00000410604 198 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 MTATP6P19-201ENST00000413797 659 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.01□□□□□ -2.25
USP42Q9H9J4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.01□□□□□ -2.25
USP42Q9H9J4 C8orf59P1-201ENST00000429930 303 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 MTND3P25-201ENST00000509243 135 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 AC117522.1-201ENST00000509821 380 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 AC005014.3-201ENST00000605985 190 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 AC004492.1-201ENST00000607036 742 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 AC138749.5-201ENST00000611461 208 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 AC116165.2-201ENST00000616705 206 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 AC099654.5-201ENST00000636479 350 ntBASIC1.01□□□□□ -2.25
USP42Q9H9J4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1□□□□□ -2.25
USP42Q9H9J4 MRPL42P2-201ENST00000403169 426 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 AL590135.1-201ENST00000422215 156 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 AC019205.3-201ENST00000424573 156 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC1□□□□□ -2.25
USP42Q9H9J4 AC016700.2-201ENST00000446011 156 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 OR2AQ1P-201ENST00000451972 200 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 MTCO2P29-201ENST00000465212 189 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 AC015911.1-201ENST00000495111 156 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC1□□□□□ -2.25
USP42Q9H9J4 MTATP6P9-201ENST00000515039 680 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 SNORA3.4-201ENST00000515969 96 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 AC133485.1-201ENST00000567176 124 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 AC138907.6-201ENST00000568401 126 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 SNORA59B-202ENST00000578183 701 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1□□□□□ -2.25
USP42Q9H9J4 AL121992.2-201ENST00000606262 256 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 AC007742.2-201ENST00000618226 398 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 AC099654.13-201ENST00000639774 207 ntBASIC1□□□□□ -2.25
USP42Q9H9J4 SNORD114-2-201ENST00000363953 78 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 RNU6-501P-201ENST00000364072 100 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 Y_RNA.255-201ENST00000364581 97 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 RNU4-56P-201ENST00000364700 142 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 MIR193B-201ENST00000384907 83 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 MIR936-201ENST00000401264 98 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 RNU6-293P-201ENST00000411259 106 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 CST2P1-201ENST00000425770 87 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 MED13P1-201ENST00000428342 171 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 RPS24P1-201ENST00000438550 371 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 AL512286.1-201ENST00000439244 400 ntBASIC0.99□□□□□ -2.25
USP42Q9H9J4 PGBD4P5-201ENST00000445958 426 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms