Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 RNU6-1159P-201ENST00000362933 107 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.83-201ENST00000363005 113 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 SNORD21-201ENST00000383953 95 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 RNU6-102P-201ENST00000384485 104 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 RNVU1-14-201ENST00000384770 164 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 MIR490-201ENST00000384865 128 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 RNU6-1140P-201ENST00000410517 106 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.793-201ENST00000411222 111 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 DBIP2-201ENST00000419076 262 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 RPL23AP83-201ENST00000434984 473 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 AC243964.1-201ENST00000441814 261 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 RN7SKP210-201ENST00000459176 261 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 AC006445.1-201ENST00000491925 405 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 AC107393.1-201ENST00000512403 346 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 RNA5SP385-201ENST00000515947 110 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 RPS15AP11-201ENST00000594193 385 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 AC012493.2-201ENST00000595083 291 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 AC004832.5-201ENST00000608677 401 ntBASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CLIP3Q96DZ5 AL109809.4-201ENST00000603520 2185 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 MIR411-201ENST00000362239 96 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.76-201ENST00000362931 109 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 RNU6-682P-201ENST00000363843 106 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 AL079342.1-201ENST00000401460 267 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 RNU2-20P-201ENST00000410425 191 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 AP000907.1-201ENST00000428428 510 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 RPL23AP58-201ENST00000440453 469 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 AC009296.1-201ENST00000443146 155 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 AC006539.3-201ENST00000454258 129 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 RNU6-496P-201ENST00000516145 99 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 RNU6-1012P-201ENST00000516606 109 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 SCARNA24.2-201ENST00000516968 130 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 SNORA70.24-201ENST00000517233 118 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 KLKP1-201ENST00000595979 403 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 AL161756.2-201ENST00000604597 246 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 U2.14-201ENST00000615943 113 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 AC241585.2-209ENST00000638217 143 ntBASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
CLIP3Q96DZ5 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 AL359854.1-201ENST00000614203 1594 ntBASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 RNU4-35P-201ENST00000362588 141 ntBASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 RNU6-378P-201ENST00000384324 107 ntBASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 AL133475.1-201ENST00000404414 305 ntBASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 AC022868.1-201ENST00000517767 391 ntBASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 AC240442.1-201ENST00000616055 283 ntBASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
CLIP3Q96DZ5 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 AC073346.2-201ENST00000624724 2058 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.199-201ENST00000364014 102 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 SNORA68.1-201ENST00000364537 132 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 AC138623.1-201ENST00000418060 216 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 AL606753.1-201ENST00000427435 87 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 HSPE1P25-201ENST00000455484 251 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 RPL36AP48-201ENST00000485521 314 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 ANXA2P1-201ENST00000505539 926 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 SERF1AP1-201ENST00000514575 187 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 AC091144.1-201ENST00000519573 138 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 AC023824.2-201ENST00000566185 400 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 AC105137.2-201ENST00000569073 466 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 MIR4765-201ENST00000585007 77 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 AC132825.6-201ENST00000638861 357 ntBASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.34□□□□□ -1.87
CLIP3Q96DZ5 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.34□□□□□ -1.88
CLIP3Q96DZ5 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CLIP3Q96DZ5 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 RNU6-227P-201ENST00000362865 103 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 166.8 ms