Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CETN4P-201ENST00000432407 469 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AL645568.3-201ENST00000433683 316 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AC002486.1-201ENST00000435098 391 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 SNRPEP8-201ENST00000442866 260 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 RPS27AP8-201ENST00000452665 445 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AC130509.1-201ENST00000464158 433 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AC087884.1-201ENST00000469738 328 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 DNAJC19P9-201ENST00000555084 351 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 HSBP1P1-201ENST00000555205 166 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AC004223.2-201ENST00000590309 544 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AC078795.3-201ENST00000602913 472 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 AC121247.2-201ENST00000604776 136 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.78□□□□□ -2.12
HDDC3Q8N4P3 Y_RNA.116-201ENST00000363292 103 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 RNA5SP100-201ENST00000410903 110 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 RNA5SP59-201ENST00000410922 110 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 MTCO2P34-201ENST00000421994 607 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 MTCYBP8-201ENST00000422855 651 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 RPL23AP95-201ENST00000426806 265 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 AL031667.1-201ENST00000440222 725 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 RNU1-131P-201ENST00000458943 161 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 BET1P1-201ENST00000482276 359 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 ARL2BPP4-201ENST00000506854 471 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 RNA5SP445-201ENST00000515889 115 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 AC087441.2-201ENST00000529141 262 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 AC021231.3-201ENST00000558497 370 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 MIR5583-1-201ENST00000580941 59 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 AP001836.1-201ENST00000604675 523 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 BX248123.2-201ENST00000606318 124 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 AP001596.2-201ENST00000608410 312 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.77□□□□□ -2.13
HDDC3Q8N4P3 SNORA26.3-201ENST00000391119 136 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 RNA5SP201-201ENST00000410316 124 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AC073464.1-201ENST00000429823 534 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 VN1R108P-201ENST00000431580 830 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 USP9YP29-201ENST00000445112 563 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AC112492.4-201ENST00000456549 352 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 RPL36AP21-201ENST00000490372 323 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 RNU5F-4P-201ENST00000516581 114 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AC073648.5-201ENST00000603502 305 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 Z98751.3-201ENST00000604447 521 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AC012493.3-201ENST00000604494 112 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AC087752.4-201ENST00000605911 462 ntBASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HDDC3Q8N4P3 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 RNU6-996P-201ENST00000365438 107 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 SNORA32.2-201ENST00000384049 122 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 RNU5A-6P-201ENST00000384136 116 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 MIR934-201ENST00000401241 83 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 AC139712.2-201ENST00000424302 339 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 RNU6-956P-201ENST00000458868 103 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 AC027575.1-201ENST00000481064 460 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 FAM206BP-201ENST00000510179 541 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 MTND4P7-201ENST00000523876 130 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 EIF4A1P12-201ENST00000551910 141 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 CYP4A27P-201ENST00000567218 190 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 MIR4419B-201ENST00000577260 68 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 MIR4528-201ENST00000577763 90 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 AC008088.1-201ENST00000580993 280 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 MIR4303-201ENST00000581299 66 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 AC010900.2-201ENST00000604508 210 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 PCGEM1.1-201ENST00000613431 131 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 AL158063.1-201ENST00000615349 536 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 uc_338.34-201ENST00000617467 174 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 AC005609.4-201ENST00000625071 447 ntBASIC1.75□□□□□ -2.13
HDDC3Q8N4P3 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 MIR126-201ENST00000362291 85 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 Y_RNA.159-201ENST00000363674 87 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 Y_RNA.224-201ENST00000364308 111 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms