Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RNU1-48P-201ENST00000516400 162 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 CENPUP1-201ENST00000526649 1202 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 AP005597.4-201ENST00000526762 229 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 AC087441.2-201ENST00000529141 262 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 AC104383.1-201ENST00000530297 370 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 AP003034.1-201ENST00000534621 422 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 AK6P1-201ENST00000540219 478 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 GNAI2P1-201ENST00000541815 315 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.55□□□□□ -2.16
PKNOX1P55347 AC109446.1-201ENST00000566172 220 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 MIR3923-201ENST00000579521 83 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 MIR4285-201ENST00000581001 85 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 AC103810.8-201ENST00000607347 118 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 AC103705.1-201ENST00000619013 241 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 AC068792.1-201ENST00000621354 417 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 AC022513.1-201ENST00000624512 117 ntBASIC1.55□□□□□ -2.16
PKNOX1P55347 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
PKNOX1P55347 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
PKNOX1P55347 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.54□□□□□ -2.16
PKNOX1P55347 LINC02555-201ENST00000563933 1951 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 AP000648.3-201ENST00000623539 4507 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 Y_RNA.409-201ENST00000383990 98 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 RNU6-38P-201ENST00000384085 107 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 RNU6-378P-201ENST00000384324 107 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 RNU6-160P-201ENST00000384591 107 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 SNORA48.1-201ENST00000390879 135 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.54□□□□□ -2.16
PKNOX1P55347 AL358453.1-201ENST00000422522 250 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.54□□□□□ -2.16
PKNOX1P55347 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.54□□□□□ -2.16
PKNOX1P55347 TPTE2P5-203ENST00000458118 728 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 AC083798.1-201ENST00000472671 131 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 AC027575.1-201ENST00000481064 460 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.54□□□□□ -2.16
PKNOX1P55347 AC008628.2-201ENST00000502605 298 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 AC008834.1-201ENST00000511612 175 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 RNU6-189P-201ENST00000516120 101 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 RNVU1-2-201ENST00000516326 135 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.54□□□□□ -2.16
PKNOX1P55347 MIR3198-2-201ENST00000577868 80 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 MIR6845-201ENST00000613182 61 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 MTND5P26-201ENST00000426018 1752 ntBASIC1.54□□□□□ -2.16
PKNOX1P55347 RNU4-56P-201ENST00000364700 142 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 Y_RNA.378-201ENST00000365652 113 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 SNORA12.2-201ENST00000391040 156 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 RNU2-41P-201ENST00000410991 178 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.53□□□□□ -2.16
PKNOX1P55347 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.53□□□□□ -2.16
PKNOX1P55347 RPS29P27-201ENST00000463711 170 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 AC096745.1-201ENST00000509945 370 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.53□□□□□ -2.16
PKNOX1P55347 RNU6-1069P-201ENST00000516612 133 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 RNU6-405P-201ENST00000516637 110 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 CYP4A27P-201ENST00000567218 190 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.53□□□□□ -2.16
PKNOX1P55347 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.53□□□□□ -2.16
PKNOX1P55347 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.53□□□□□ -2.16
PKNOX1P55347 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.53□□□□□ -2.16
PKNOX1P55347 MTND5P10-201ENST00000603719 1809 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 AC064836.2-201ENST00000609491 462 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 MIR8081-201ENST00000611533 95 ntBASIC1.53□□□□□ -2.16
PKNOX1P55347 CBX3P1-201ENST00000325243 554 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
PKNOX1P55347 Y_RNA.51-201ENST00000362725 102 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 U3.9-201ENST00000363823 204 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 MIR320A-201ENST00000385302 82 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AL627390.1-201ENST00000396055 340 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 RNU2-66P-201ENST00000410650 161 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 RNA5SP100-201ENST00000410903 110 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 RNA5SP59-201ENST00000410922 110 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 USP9YP14-201ENST00000430663 563 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.52□□□□□ -2.17
PKNOX1P55347 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AC112492.4-201ENST00000456549 352 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.52□□□□□ -2.17
PKNOX1P55347 RNA5SP57-201ENST00000459463 123 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.52□□□□□ -2.17
PKNOX1P55347 AC021146.2-201ENST00000504736 556 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.52□□□□□ -2.17
PKNOX1P55347 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.52□□□□□ -2.17
PKNOX1P55347 AC005741.1-201ENST00000511094 432 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 RNA5SP401-201ENST00000515920 127 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 SNORA44.1-201ENST00000517031 108 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 MTND2P38-201ENST00000522536 667 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.52□□□□□ -2.17
PKNOX1P55347 EIF4A1P12-201ENST00000551910 141 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AC021231.3-201ENST00000558497 370 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AC092747.3-201ENST00000603769 301 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AC245008.1-201ENST00000608123 476 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AC005520.5-201ENST00000613926 164 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AC130454.1-201ENST00000622948 401 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 AC006026.1-201ENST00000444025 1803 ntBASIC1.52□□□□□ -2.17
PKNOX1P55347 MTND4P23-201ENST00000447723 1363 ntBASIC1.51□□□□□ -2.17
PKNOX1P55347 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
PKNOX1P55347 Y_RNA.167-201ENST00000363735 109 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms