| MUC1 | P15941 | MIR504-201 | ENST00000385065 | 83 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | TRDJ2-201 | ENST00000390475 | 54 nt | APPRIS P1 BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | CBX3P9-201 | ENST00000402326 | 552 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | MIR1289-2-201 | ENST00000408360 | 111 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU2-63P-201 | ENST00000410792 | 194 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AL500522.1-201 | ENST00000423667 | 318 nt | TSL 3 BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | LINC02541-201 | ENST00000427157 | 327 nt | TSL 3 BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | MRPS10P2-201 | ENST00000431226 | 381 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | SNAP23P1-201 | ENST00000433229 | 246 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC091153.2-202 | ENST00000441700 | 384 nt | TSL 3 BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | LINC01691-201 | ENST00000450546 | 426 nt | TSL 5 BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AL160162.1-201 | ENST00000456715 | 442 nt | TSL 3 BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | LINC01198-202 | ENST00000458282 | 558 nt | TSL 5 BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RPL30P1-201 | ENST00000488676 | 339 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC018868.1-201 | ENST00000491307 | 315 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | CKS1BP2-201 | ENST00000497342 | 240 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RPL23AP63-201 | ENST00000498752 | 471 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC091874.1-201 | ENST00000511402 | 339 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | SNORA19.2-201 | ENST00000516013 | 114 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU5F-2P-201 | ENST00000516066 | 82 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | Y_RNA.665-201 | ENST00000516177 | 98 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU6-250P-201 | ENST00000516958 | 103 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC109635.3-201 | ENST00000529536 | 185 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | IMMP1LP2-201 | ENST00000552954 | 492 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AL133279.1-202 | ENST00000556789 | 456 nt | TSL 5 BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC009269.4-201 | ENST00000557828 | 440 nt | TSL 3 BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | MIR4299-201 | ENST00000577899 | 72 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC091135.1-201 | ENST00000585943 | 307 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | CTHRC1P1-201 | ENST00000605383 | 469 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC104458.1-201 | ENST00000608243 | 463 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC090517.3-201 | ENST00000625170 | 141 nt | BASIC | 1.45 | □□□□□ -2.18 | | |
| MUC1 | P15941 | Y_RNA.9-201 | ENST00000362354 | 101 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU6-944P-201 | ENST00000364023 | 107 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | SNORD32A-201 | ENST00000364805 | 84 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | Y_RNA.373-201 | ENST00000365600 | 103 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU6-332P-201 | ENST00000391193 | 108 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | SNORD115-47-201 | ENST00000391226 | 86 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU6-1245P-201 | ENST00000411130 | 106 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | MTCO2P3-201 | ENST00000442543 | 421 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RPL23AP6-201 | ENST00000446637 | 472 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | CYP2C59P-201 | ENST00000457790 | 269 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | BMPR1B-AS1-201 | ENST00000510795 | 511 nt | TSL 3 BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU6-586P-201 | ENST00000517265 | 104 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC087854.1-201 | ENST00000519706 | 414 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC103853.2-201 | ENST00000519805 | 716 nt | TSL 3 BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC124290.1-202 | ENST00000523342 | 387 nt | TSL 3 BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC104576.1-201 | ENST00000524225 | 88 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC011611.2-201 | ENST00000549888 | 358 nt | TSL 3 BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC044840.1-201 | ENST00000577641 | 472 nt | TSL 3 BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | VN1R107P-201 | ENST00000601784 | 209 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC068790.6-201 | ENST00000602558 | 258 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | ELOCP5-201 | ENST00000604924 | 333 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | MIR502-201 | ENST00000606349 | 86 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC068944.2-201 | ENST00000610373 | 403 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | DCAF17-212 | ENST00000611110 | 975 nt | TSL 1 (best) BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC022202.1-201 | ENST00000613515 | 211 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC090517.2-201 | ENST00000614966 | 680 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | FAM157A-202 | ENST00000615155 | 405 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC063943.3-201 | ENST00000615562 | 356 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | DLX6-AS1_1.1-201 | ENST00000621599 | 180 nt | BASIC | 1.44 | □□□□□ -2.18 | | |
| MUC1 | P15941 | CEP57L1-223 | ENST00000523787 | 2522 nt | APPRIS ALT2 TSL 5 BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | MTND5P10-201 | ENST00000603719 | 1809 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | Y_RNA.89-201 | ENST00000363031 | 102 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNA5SP240-201 | ENST00000365355 | 128 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | BTLA-202 | ENST00000383680 | 726 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | TRAJ21-201 | ENST00000390516 | 55 nt | APPRIS P1 BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | EIF4E2P1-201 | ENST00000393781 | 255 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | ARL5AP1-201 | ENST00000418991 | 388 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC035139.1-201 | ENST00000423256 | 273 nt | TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | LINC01549-201 | ENST00000440664 | 714 nt | TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | HSPE1P24-201 | ENST00000450782 | 238 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | NDUFAF4P4-201 | ENST00000454883 | 502 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | HMGN2P26-201 | ENST00000463169 | 339 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC012312.1-201 | ENST00000503710 | 527 nt | TSL 2 BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC096711.2-201 | ENST00000510592 | 454 nt | TSL 5 BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC092436.3-201 | ENST00000511788 | 257 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC011352.1-201 | ENST00000512300 | 793 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | SNORA48.11-201 | ENST00000517015 | 89 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | LINC02398-201 | ENST00000536666 | 431 nt | TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | ZNF519P2-201 | ENST00000557032 | 169 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC104581.2-201 | ENST00000572227 | 430 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | MIR4298-201 | ENST00000584380 | 73 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | ZNFX1-AS1_2.1-201 | ENST00000610973 | 93 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | U4.5-201 | ENST00000617137 | 123 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | U4atac.1-201 | ENST00000618345 | 95 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | EFCAB5-213 | ENST00000638539 | 168 nt | TSL 5 BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC073869.6-201 | ENST00000640656 | 341 nt | BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | MRPL42-202 | ENST00000393128 | 1983 nt | APPRIS ALT1 TSL 3 BASIC | 1.43 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC121333.1-201 | ENST00000567488 | 2709 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | PIK3C2G-203 | ENST00000535651 | 2497 nt | TSL 5 BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU6-1252P-201 | ENST00000363054 | 104 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU6-254P-201 | ENST00000363377 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU6-534P-201 | ENST00000364877 | 106 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | Y_RNA.295-201 | ENST00000364918 | 102 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU6-1329P-201 | ENST00000365664 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | TSACC-205 | ENST00000368255 | 751 nt | APPRIS P1 TSL 1 (best) BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | RNU2-48P-201 | ENST00000410694 | 191 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC005482.1-201 | ENST00000420758 | 575 nt | TSL 4 BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | LINC01675-201 | ENST00000426519 | 701 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| MUC1 | P15941 | AC092989.1-201 | ENST00000481235 | 277 nt | BASIC | 1.42 | □□□□□ -2.18 | | |