Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 LARP7P2-201ENST00000575306 125 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 MIR5695-201ENST00000579717 85 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 AC079610.2-201ENST00000604818 690 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 AL136317.1-201ENST00000612653 226 ntBASIC-0.53□□□□□ -2.49
CCDC88BA6NC98 RNU6-1210P-201ENST00000363775 107 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 RNU6-1305P-201ENST00000364353 104 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 MIR145-201ENST00000384967 88 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AL592310.1-201ENST00000414330 671 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AC123900.1-201ENST00000420390 96 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 BTF3P15-201ENST00000455606 336 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AL163051.2-201ENST00000618976 735 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AC096531.1-201ENST00000419107 107 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AC069257.2-201ENST00000441819 155 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 MTND4P19-201ENST00000446659 478 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 HMGB1P28-201ENST00000507778 552 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AC027419.1-201ENST00000522976 328 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AC112693.2-201ENST00000556538 232 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 AP001981.2-201ENST00000603241 418 ntBASIC-0.54□□□□□ -2.5
CCDC88BA6NC98 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 RNU4-27P-201ENST00000410889 139 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 MTCO2P1-201ENST00000424648 477 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 BTF3P11-201ENST00000426582 477 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 MTND2P21-201ENST00000436242 1042 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 EEF1A1P39-201ENST00000440791 250 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 SNRPEP8-201ENST00000442866 260 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 RPL39P39-201ENST00000455840 151 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 ELOCP24-201ENST00000456370 334 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 MTCO3P28-201ENST00000513351 515 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 RNU6-1096P-201ENST00000517089 102 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 AL391001.1-201ENST00000602747 715 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 AC022022.2-201ENST00000602989 360 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 AC104985.3-201ENST00000623479 597 ntBASIC-0.55□□□□□ -2.5
CCDC88BA6NC98 SEC63P2-201ENST00000503863 1939 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 SUGT1P1-201ENST00000379514 476 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 SNORD105-201ENST00000386910 85 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 MIR1468-201ENST00000410600 86 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 SNX3P1X-201ENST00000414887 175 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 SNORD57-201ENST00000448188 72 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 RPS3AP17-201ENST00000472594 777 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 AC106038.2-201ENST00000520706 568 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 AC109810.1-201ENST00000534066 224 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 MIR3136-201ENST00000583498 78 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 VN1R88P-201ENST00000596787 292 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 AC112187.2-201ENST00000604345 283 ntBASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC-0.56□□□□□ -2.5
CCDC88BA6NC98 RNU6-512P-201ENST00000364438 103 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 SNORD114-12-201ENST00000365400 75 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 RNU6-929P-201ENST00000384429 107 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 AL034345.1-201ENST00000407768 123 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 SNORD71-201ENST00000411292 86 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 AL139396.1-201ENST00000421137 167 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 AC022364.2-201ENST00000457963 554 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 SNORD4A-201ENST00000459174 72 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 MTND5P13-201ENST00000513046 1079 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 RNY1P9-201ENST00000532431 109 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 AC090502.2-201ENST00000549267 280 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 AC131055.1-201ENST00000584626 316 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 AL161798.1-201ENST00000604630 131 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 MIR8076-201ENST00000611401 83 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 PCGEM1.1-201ENST00000613431 131 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.57□□□□□ -2.5
CCDC88BA6NC98 Y_RNA.453-201ENST00000384223 109 ntBASIC-0.58□□□□□ -2.5
CCDC88BA6NC98 SNORA40.8-201ENST00000411034 126 ntBASIC-0.58□□□□□ -2.5
CCDC88BA6NC98 AP000797.1-201ENST00000478870 387 ntBASIC-0.58□□□□□ -2.5
CCDC88BA6NC98 AC104136.1-201ENST00000512969 394 ntBASIC-0.58□□□□□ -2.5
CCDC88BA6NC98 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.58□□□□□ -2.5
CCDC88BA6NC98 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC-0.58□□□□□ -2.5
CCDC88BA6NC98 ZNF519P3-201ENST00000557158 1032 ntBASIC-0.58□□□□□ -2.5
CCDC88BA6NC98 MIR103A2-201ENST00000362154 78 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 RNU6-747P-201ENST00000390928 104 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 RNU6-241P-201ENST00000391148 104 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 AL603865.2-201ENST00000401679 213 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 RNU6-77P-201ENST00000410554 91 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 AC068533.2-201ENST00000411872 306 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 AC016909.1-201ENST00000415916 166 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 RPS15AP10-201ENST00000432472 382 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 MTND2P5-201ENST00000432656 1006 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 MTND1P30-201ENST00000441241 901 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 OFD1P7Y-201ENST00000454643 1155 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 MTCO3P10-201ENST00000455912 772 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 OR9P1P-201ENST00000496431 281 ntBASIC-0.59□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms