Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR6748-201ENST00000610433 71 ntBASIC4.75□□□□□ -1.65
VPS9D1Q9Y2B5 AL022401.1-201ENST00000619498 108 ntBASIC4.75□□□□□ -1.65
VPS9D1Q9Y2B5 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
VPS9D1Q9Y2B5 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS9D1Q9Y2B5 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS9D1Q9Y2B5 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS9D1Q9Y2B5 A2MP1-204ENST00000566278 4130 ntBASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 AC016588.2-201ENST00000632484 3021 ntBASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 MIR1912-201ENST00000410389 80 ntBASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 AC063976.3-201ENST00000426849 329 ntBASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 RPL17P51-201ENST00000605218 238 ntBASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 FAM27B-201ENST00000610601 213 ntBASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 U7.3-201ENST00000616123 62 ntBASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.74□□□□□ -1.65
VPS9D1Q9Y2B5 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 AL590240.1-201ENST00000334118 313 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 Y_RNA.10-201ENST00000362371 110 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 RNU6-486P-201ENST00000363116 107 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 MIR493-201ENST00000385254 89 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 MIR550A3-201ENST00000390735 95 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 U3.30-201ENST00000391308 210 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 AL031121.1-201ENST00000406553 254 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 RN7SKP267-201ENST00000410381 285 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 RPS3P1-201ENST00000456781 192 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 AC107626.1-201ENST00000471084 183 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 AC027419.1-201ENST00000522976 328 ntBASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
VPS9D1Q9Y2B5 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 RNA5SP123-201ENST00000363244 119 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 RNU1-83P-201ENST00000363426 164 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 RNU6-816P-201ENST00000390914 107 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 RNU6-1268P-201ENST00000391214 107 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 RNU6-1239P-201ENST00000391310 107 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 AL645733.1-201ENST00000402250 217 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 PPIAP31-201ENST00000405422 495 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 Y_RNA.625-201ENST00000411256 107 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 snoU13.20-201ENST00000459180 104 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 AC108751.2-201ENST00000469993 231 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 IGLV2-34-201ENST00000490007 283 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 RNU6-162P-201ENST00000516228 103 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 AC093249.4-201ENST00000564755 259 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 AC004944.1-201ENST00000517807 3059 ntBASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS9D1Q9Y2B5 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
VPS9D1Q9Y2B5 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
VPS9D1Q9Y2B5 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
VPS9D1Q9Y2B5 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 RNU6-690P-201ENST00000365242 106 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 SNORD61-201ENST00000384252 73 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 RNU6-644P-201ENST00000391155 98 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 RNU6-402P-201ENST00000410678 103 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 COX6B1P1-201ENST00000415962 213 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 AC012671.1-201ENST00000451912 203 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 RNU7-57P-201ENST00000459540 60 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 RNU6ATAC12P-201ENST00000516542 115 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 AC107918.3-201ENST00000533272 382 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 RPS15AP11-201ENST00000594193 385 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 AL391358.1-201ENST00000605342 190 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 AL356489.2-201ENST00000566968 3528 ntBASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS9D1Q9Y2B5 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 RNU6-1010P-201ENST00000362757 107 ntBASIC4.7□□□□□ -1.66
VPS9D1Q9Y2B5 RNU6-1099P-201ENST00000363533 107 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms