Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AP003733.2-201ENST00000529409 171 ntBASIC2.99□□□□□ -1.93
VSX1Q9NZR4 AC027288.2-201ENST00000553028 243 ntBASIC2.99□□□□□ -1.93
VSX1Q9NZR4 MIR3923-201ENST00000579521 83 ntBASIC2.99□□□□□ -1.93
VSX1Q9NZR4 AL034408.1-202ENST00000636088 415 ntBASIC2.99□□□□□ -1.93
VSX1Q9NZR4 AL450472.1-202ENST00000637286 180 ntBASIC2.99□□□□□ -1.93
VSX1Q9NZR4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VSX1Q9NZR4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.99□□□□□ -1.93
VSX1Q9NZR4 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VSX1Q9NZR4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
VSX1Q9NZR4 RNU4-35P-201ENST00000362588 141 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 RNU6-529P-201ENST00000363383 104 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 RNU6-245P-201ENST00000384020 107 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 SNORD63-201ENST00000384262 68 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 Y_RNA.462-201ENST00000384268 102 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 Y_RNA.478-201ENST00000384358 107 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 SNORD115-46-201ENST00000390982 71 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 RNA5SP354-201ENST00000391247 136 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.98□□□□□ -1.93
VSX1Q9NZR4 AL031183.1-201ENST00000457667 207 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 SNORA84-201ENST00000459229 133 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 AC025518.1-201ENST00000479856 347 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 RPS23P5-201ENST00000495419 428 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 AC010469.2-201ENST00000496412 480 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 RNU6-397P-201ENST00000516226 104 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 SNORA31.6-201ENST00000516241 130 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 AC104027.1-201ENST00000521887 300 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.98□□□□□ -1.93
VSX1Q9NZR4 AC240442.1-201ENST00000616055 283 ntBASIC2.98□□□□□ -1.93
VSX1Q9NZR4 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VSX1Q9NZR4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VSX1Q9NZR4 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VSX1Q9NZR4 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 AL355596.1-201ENST00000565399 3996 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 RNU6-212P-201ENST00000362642 104 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 Y_RNA.64-201ENST00000362845 102 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 SNORD81.1-201ENST00000363064 77 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 RNU6-879P-201ENST00000364328 108 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 Y_RNA.350-201ENST00000365409 98 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 Y_RNA.376-201ENST00000365638 108 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 RNU6-281P-201ENST00000384212 103 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 RNU6-708P-201ENST00000384217 107 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 MIR554-201ENST00000384874 96 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 U3.19-201ENST00000390893 196 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 U3.26-201ENST00000391236 204 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 AL133547.1-201ENST00000448546 220 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 SNORD127-201ENST00000458892 86 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 RNU6-1132P-201ENST00000459214 107 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 HMGB1P35-201ENST00000503360 598 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 SNORA67.7-201ENST00000516664 135 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 MIR4659A-201ENST00000580269 81 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 SNORD98-201ENST00000636377 67 ntBASIC2.97□□□□□ -1.93
VSX1Q9NZR4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
VSX1Q9NZR4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.93
VSX1Q9NZR4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 BX322639.1-202ENST00000423987 2213 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 MIR335-201ENST00000362173 94 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.222-201ENST00000364264 102 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 RNA5SP139-201ENST00000364340 117 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 RNU6-1318P-201ENST00000365389 103 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 Y_RNA.396-201ENST00000383949 103 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 RNU6-472P-201ENST00000384299 107 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 MIR10B-201ENST00000385011 110 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 MIR767-201ENST00000390228 109 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 MIR887-201ENST00000401258 79 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AL390729.2-201ENST00000416137 156 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AC139712.2-201ENST00000424302 339 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AC004383.1-201ENST00000438135 289 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 TRBVB-201ENST00000477100 408 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AC090525.1-201ENST00000479116 478 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AC026403.1-201ENST00000518938 295 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AC068657.1-201ENST00000520807 306 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AC007536.1-201ENST00000533382 349 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 uc_338.1-201ENST00000612113 180 ntBASIC2.96□□□□□ -1.94
VSX1Q9NZR4 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
VSX1Q9NZR4 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.95□□□□□ -1.94
VSX1Q9NZR4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.95□□□□□ -1.94
VSX1Q9NZR4 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.95□□□□□ -1.94
VSX1Q9NZR4 AC010615.1-201ENST00000594254 1764 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 157.3 ms