Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC006445.1-201ENST00000491925 405 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 SEM1P1-201ENST00000506694 209 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 AC067942.3-201ENST00000512025 362 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 SNORA31.6-201ENST00000516241 130 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 IGKV2-26-201ENST00000518305 343 ntBASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
TRIM39Q9HCM9 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
TRIM39Q9HCM9 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
TRIM39Q9HCM9 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.4□□□□□ -1.86
TRIM39Q9HCM9 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.4□□□□□ -1.86
TRIM39Q9HCM9 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
TRIM39Q9HCM9 AC058791.1-201ENST00000608412 3198 ntBASIC3.4□□□□□ -1.86
TRIM39Q9HCM9 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 RPL21P1-201ENST00000399532 476 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 DYNLT3P2-201ENST00000442517 295 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 RPL27AP5-201ENST00000469428 449 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 FCF1P8-201ENST00000510322 597 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 SNORA70.19-201ENST00000516717 90 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 RNU6-897P-201ENST00000517135 105 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 SNRPGP20-201ENST00000604477 205 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 AC084757.4-201ENST00000616350 526 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 AC010205.1-201ENST00000616668 449 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 MIR7975-201ENST00000619350 68 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 AC022149.2-201ENST00000621061 203 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 SNORA50A-202ENST00000629536 136 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 AL355596.1-201ENST00000565399 3996 ntBASIC3.4□□□□□ -1.87
TRIM39Q9HCM9 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 RNU6-770P-201ENST00000363929 105 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 Y_RNA.193-201ENST00000363979 102 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 RNU6-245P-201ENST00000384020 107 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 Y_RNA.458-201ENST00000384240 102 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 RNU6-574P-201ENST00000384265 107 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 AC007215.1-201ENST00000464893 276 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 AC010469.2-201ENST00000496412 480 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 RN7SKP49-201ENST00000516675 260 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 IGHV3-76-201ENST00000522465 295 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 AC012314.7-201ENST00000619693 93 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 AC002064.3-201ENST00000623448 346 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.39□□□□□ -1.87
TRIM39Q9HCM9 AP003122.5-201ENST00000527668 3766 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 BX322639.1-202ENST00000423987 2213 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 U3.9-201ENST00000363823 204 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 Y_RNA.214-201ENST00000364201 112 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 RNU1-33P-201ENST00000364249 162 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 RNA5SP72-201ENST00000364442 117 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 Y_RNA.618-201ENST00000410949 107 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 EIF4EP4-201ENST00000424916 578 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 AC112220.1-201ENST00000434628 355 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 PRSS3P4-201ENST00000453323 162 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 RPL21P10-201ENST00000463521 490 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 SCARNA17.1-201ENST00000516211 143 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 SCARNA17.2-201ENST00000516334 143 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 RNU6-1012P-201ENST00000516606 109 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 AC026470.2-201ENST00000561492 181 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 UBL5P4-201ENST00000562584 236 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 MIR3944-201ENST00000581277 108 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 AC008739.2-201ENST00000597006 317 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 SCARNA17.4-201ENST00000614296 143 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 ZNF204P-201ENST00000416749 2397 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 AC069528.2-201ENST00000624849 1991 ntBASIC3.38□□□□□ -1.87
TRIM39Q9HCM9 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 AC010329.5-201ENST00000623497 2174 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 Y_RNA.19-201ENST00000362462 99 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 SNORA63.1-201ENST00000362493 131 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 RNU6-281P-201ENST00000384212 103 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 MIR34B-201ENST00000385076 84 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms