Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC016727.1-205ENST00000605437 569 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 MIR1302-1-201ENST00000637932 143 ntBASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.32□□□□□ -2.04
UPF3AQ9H1J1 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RNU4-79P-201ENST00000362764 141 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RNU6-428P-201ENST00000362942 107 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 SNORA38-201ENST00000363946 132 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RNU6-827P-201ENST00000365553 106 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RNU6-128P-201ENST00000383976 107 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RNU6-1013P-201ENST00000384180 107 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RNU6-1072P-201ENST00000384703 107 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RNU6-443P-201ENST00000384780 107 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 MIR144-201ENST00000384886 86 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 Z82209.1-201ENST00000422141 2135 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC009414.1-201ENST00000427200 443 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RPS15AP5-201ENST00000436276 388 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AL139109.1-201ENST00000455491 297 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RNU7-26P-201ENST00000458980 63 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC130509.1-201ENST00000464158 433 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC090096.1-201ENST00000489168 390 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 MTCO1P29-201ENST00000496868 288 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 MTCYBP40-201ENST00000509390 1135 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 SNORA31.18-201ENST00000517043 134 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC069113.1-201ENST00000517763 267 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC026371.1-201ENST00000551867 419 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 TRAV32-201ENST00000553993 340 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC103996.1-201ENST00000555468 102 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC005668.1-201ENST00000571142 476 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 MIR5694-201ENST00000581190 76 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC008121.1-201ENST00000603244 268 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AP000942.3-201ENST00000603702 160 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 U4.7-201ENST00000638126 106 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 AC006026.1-201ENST00000444025 1803 ntBASIC2.31□□□□□ -2.04
UPF3AQ9H1J1 RNU6-461P-201ENST00000364195 107 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.473-201ENST00000384333 102 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 SNORD116-29-201ENST00000384516 83 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 MT-TD-201ENST00000387419 68 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 FTH1P15-201ENST00000406984 280 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 RNU2-49P-201ENST00000410666 184 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 FABP5P14-201ENST00000437273 393 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 BTF3P15-201ENST00000455606 336 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 AC026801.1-201ENST00000497178 464 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 RNA5SP182-201ENST00000516064 82 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 SNORA43.2-201ENST00000516652 128 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 MIR6895-201ENST00000613497 78 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 AC022140.2-201ENST00000623500 188 ntBASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
UPF3AQ9H1J1 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.67-201ENST00000362870 100 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 RNU1-17P-201ENST00000363022 152 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 RNU6-694P-201ENST00000364071 147 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.813-201ENST00000364639 102 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.535-201ENST00000384612 99 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 RNU6-306P-201ENST00000384617 107 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 MIR583-201ENST00000384846 75 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 RNA5SP213-201ENST00000391031 106 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 RNU6-1304P-201ENST00000411374 106 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 AL031274.1-201ENST00000450334 232 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 AC116655.1-201ENST00000508324 901 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 AC096745.1-201ENST00000509945 370 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 PTP4A1P4-201ENST00000512479 322 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 AL121821.2-201ENST00000556081 394 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 AC244517.12-201ENST00000623581 663 ntBASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.29□□□□□ -2.04
UPF3AQ9H1J1 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.151-201ENST00000363566 112 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 RNU6-336P-201ENST00000364891 107 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 Y_RNA.394-201ENST00000383942 103 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 RNU6-214P-201ENST00000384130 107 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC019129.1-201ENST00000403786 261 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC074085.1-201ENST00000413598 418 ntBASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.28□□□□□ -2.04
UPF3AQ9H1J1 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms