Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 ZNF355P-201ENST00000427301 3216 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 RNU4-15P-201ENST00000362613 141 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 SNORA26.3-201ENST00000391119 136 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 RNU6-648P-201ENST00000410190 107 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 RNA5SP489-201ENST00000410986 109 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AL590135.1-201ENST00000422215 156 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AC019205.3-201ENST00000424573 156 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AL133396.1-201ENST00000432048 687 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 MTND1P1-201ENST00000445453 368 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AC016700.2-201ENST00000446011 156 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 RPL23AP6-201ENST00000446637 472 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AC015911.1-201ENST00000495111 156 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AC016632.1-201ENST00000503994 196 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AC009646.1-201ENST00000510455 318 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 RNU6-965P-201ENST00000516721 96 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AC087854.1-201ENST00000519706 414 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AC243960.4-201ENST00000600532 288 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 AP001836.1-201ENST00000604675 523 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 MIR8081-201ENST00000611533 95 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.66□□□□□ -2.14
KLHDC3Q9BQ90 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.65□□□□□ -2.14
KLHDC3Q9BQ90 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 SNORA16.1-201ENST00000364597 132 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 RNU4-20P-201ENST00000365601 151 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 SNORD14D-201ENST00000384390 87 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 MIR514A2-201ENST00000385131 88 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 MIR514A3-201ENST00000385132 88 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 BTF3L4P2-201ENST00000392798 346 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 CALM2P3-201ENST00000400429 449 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 MIR1294-201ENST00000408503 142 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 RN7SKP284-201ENST00000411002 343 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 RNA5SP450-201ENST00000411206 102 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AP000275.1-201ENST00000411943 390 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AL158823.1-201ENST00000418441 478 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AL121890.1-201ENST00000435457 205 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 RNU6-1208P-201ENST00000459588 107 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AC132942.1-201ENST00000486753 483 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AC145146.1-201ENST00000496370 254 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AC019235.1-201ENST00000503847 207 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 PTP4A1P4-201ENST00000512479 322 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 RNU6-1069P-201ENST00000516612 133 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AP005639.2-201ENST00000527592 928 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 TRAV32-201ENST00000553993 340 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AL118558.2-201ENST00000556294 238 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AC103591.3-201ENST00000608684 209 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 AL359314.1-201ENST00000616913 261 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.65□□□□□ -2.15
KLHDC3Q9BQ90 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 SNORD32B-201ENST00000364460 84 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 Y_RNA.378-201ENST00000365652 113 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 SNORD73A-201ENST00000386062 65 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 SUMO2P12-201ENST00000405924 140 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 MTCYBP2-201ENST00000407745 171 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 MIR1262-201ENST00000408276 93 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 AL358453.1-201ENST00000422522 250 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 SNORA19.2-201ENST00000516013 114 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 RNU6-1038P-201ENST00000516516 104 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 SNORA31.16-201ENST00000516773 139 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 AL512360.1-201ENST00000555346 234 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 MIR4298-201ENST00000584380 73 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 AP000654.2-201ENST00000605633 586 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 AC092807.2-201ENST00000609367 243 ntBASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
KLHDC3Q9BQ90 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 SNORD48-201ENST00000364953 64 ntBASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 MIR764-201ENST00000390811 85 ntBASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 RNA5SP465-201ENST00000391195 109 ntBASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 SEPT14P3-201ENST00000439401 183 ntBASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 AL732372.2-207ENST00000445840 183 ntBASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 MTND3P16-201ENST00000452205 344 ntBASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 SEPT14P2-201ENST00000453405 183 ntBASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 snoU13.26-201ENST00000459452 105 ntBASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 RNU6-1037P-201ENST00000459571 107 ntBASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 YWHAEP4-201ENST00000505390 198 ntBASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.63□□□□□ -2.15
KLHDC3Q9BQ90 AC116337.1-201ENST00000509680 687 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms