Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC063944.3-201ENST00000609969 533 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 AC119674.1-220ENST00000641502 1048 ntBASIC-1.14□□□□□ -2.59
VPS13AQ96RL7 RNU6-226P-201ENST00000363778 107 ntBASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 RPL23AP50-201ENST00000434149 455 ntBASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 AC026271.5-201ENST00000577873 130 ntBASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 AL355816.2-201ENST00000610049 647 ntBASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 AC006441.5-201ENST00000612680 209 ntBASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 AL590396.4-201ENST00000636779 956 ntBASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 PCNPP3-201ENST00000393579 471 ntBASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 FGF7P5-201ENST00000441829 291 ntBASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 RNU6-1007P-201ENST00000516586 107 ntBASIC-1.15□□□□□ -2.59
VPS13AQ96RL7 LINC02555-201ENST00000563933 1951 ntBASIC-1.16□□□□□ -2.59
VPS13AQ96RL7 RNA5SP517-201ENST00000364724 117 ntBASIC-1.16□□□□□ -2.59
VPS13AQ96RL7 AC133104.1-201ENST00000429100 218 ntBASIC-1.16□□□□□ -2.59
VPS13AQ96RL7 MTCYBP11-201ENST00000447254 1109 ntBASIC-1.16□□□□□ -2.59
VPS13AQ96RL7 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC-1.16□□□□□ -2.59
VPS13AQ96RL7 AC134698.4-201ENST00000523451 826 ntBASIC-1.16□□□□□ -2.59
VPS13AQ96RL7 AF235103.2-201ENST00000525753 346 ntBASIC-1.16□□□□□ -2.59
VPS13AQ96RL7 AC011195.1-201ENST00000578177 177 ntBASIC-1.16□□□□□ -2.59
VPS13AQ96RL7 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC-1.16□□□□□ -2.6
VPS13AQ96RL7 AC104164.3-201ENST00000467363 1258 ntBASIC-1.16□□□□□ -2.6
VPS13AQ96RL7 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC-1.16□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.362-201ENST00000365518 110 ntBASIC-1.16□□□□□ -2.6
VPS13AQ96RL7 RNU6-296P-201ENST00000384608 107 ntBASIC-1.16□□□□□ -2.6
VPS13AQ96RL7 RAB28P5-201ENST00000427490 651 ntBASIC-1.16□□□□□ -2.6
VPS13AQ96RL7 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC-1.16□□□□□ -2.6
VPS13AQ96RL7 RNU6-586P-201ENST00000517265 104 ntBASIC-1.16□□□□□ -2.6
VPS13AQ96RL7 MIR3167-201ENST00000579623 85 ntBASIC-1.16□□□□□ -2.6
VPS13AQ96RL7 AC246785.4-201ENST00000605374 287 ntBASIC-1.16□□□□□ -2.6
VPS13AQ96RL7 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 snoU13.4-201ENST00000458916 104 ntBASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 AC108157.1-201ENST00000510511 539 ntBASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.119-201ENST00000363301 96 ntBASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.494-201ENST00000384432 111 ntBASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 UBE2V1P15-201ENST00000407776 448 ntBASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 NFU1P2-201ENST00000448700 469 ntBASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 RNU7-21P-201ENST00000459430 62 ntBASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 AC016597.2-201ENST00000613256 341 ntBASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 PCGEM1.1-201ENST00000613431 131 ntBASIC-1.17□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 RNU6-1162P-201ENST00000384443 104 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 AC010385.1-201ENST00000412374 256 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 AL355802.4-201ENST00000607635 548 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.270-201ENST00000364693 104 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 AC010460.2-201ENST00000509054 677 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 Z82243.1-201ENST00000609432 473 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 MIR563-201ENST00000385080 79 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 SNORD39.2-201ENST00000579995 76 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 AP000860.1-201ENST00000605250 559 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 AL590491.3-201ENST00000610731 82 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 AC006963.1-201ENST00000624003 1052 ntBASIC-1.18□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.56-201ENST00000362798 112 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 MIR597-201ENST00000384968 97 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 MIR760-201ENST00000390220 80 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 TRIM60P10Y-201ENST00000425589 751 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 AC007742.1-201ENST00000425789 329 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 MTCO3P5-201ENST00000433620 714 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 ELOCP26-201ENST00000436067 329 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 COPS8P3-201ENST00000526024 482 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 MIR1298-201ENST00000408783 112 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 SSR1P2-201ENST00000415208 787 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 AC095031.1-201ENST00000623685 672 ntBASIC-1.19□□□□□ -2.6
VPS13AQ96RL7 SNORA8.2-201ENST00000384372 139 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 TIMM9P1-201ENST00000436122 256 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 AC015688.6-201ENST00000577737 104 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 AC107304.1-201ENST00000604229 296 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.497-201ENST00000384447 98 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 RNU6-360P-201ENST00000390944 104 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 ZNF519P3-201ENST00000557158 1032 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 AP000942.4-201ENST00000604811 241 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 MTND5P2-201ENST00000442927 1142 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 Y_RNA.679-201ENST00000516416 91 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 AC027419.1-201ENST00000522976 328 ntBASIC-1.2□□□□□ -2.6
VPS13AQ96RL7 MIR335-201ENST00000362173 94 ntBASIC-1.21□□□□□ -2.6
VPS13AQ96RL7 MIR204-201ENST00000385200 110 ntBASIC-1.21□□□□□ -2.6
VPS13AQ96RL7 RPL30P15-201ENST00000457129 321 ntBASIC-1.21□□□□□ -2.6
VPS13AQ96RL7 AC004062.1-201ENST00000509926 645 ntBASIC-1.21□□□□□ -2.6
VPS13AQ96RL7 MIR5692A1-201ENST00000580523 69 ntBASIC-1.21□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms