Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 HSPE1P21-201ENST00000438283 308 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 RPS29P21-201ENST00000496272 170 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 RNU6-314P-201ENST00000516574 104 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS39Q96JC1 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS39Q96JC1 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.88□□□□□ -2.11
VPS39Q96JC1 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS39Q96JC1 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS39Q96JC1 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS39Q96JC1 AC012493.3-201ENST00000604494 112 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 AC099654.12-201ENST00000639868 649 ntBASIC1.88□□□□□ -2.11
VPS39Q96JC1 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
VPS39Q96JC1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.88□□□□□ -2.11
VPS39Q96JC1 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
VPS39Q96JC1 Y_RNA.167-201ENST00000363735 109 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 SNORD116-4-201ENST00000384733 96 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 Y_RNA.597-201ENST00000410463 100 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 AC009310.1-201ENST00000414414 451 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS39Q96JC1 AL590556.1-201ENST00000423231 483 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 RPS15AP10-201ENST00000432472 382 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 IFNA20P-201ENST00000436840 528 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS39Q96JC1 MTND1P1-201ENST00000445453 368 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS39Q96JC1 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.87□□□□□ -2.11
VPS39Q96JC1 RPL38P4-201ENST00000502376 214 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 AC091874.1-201ENST00000511402 339 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 RNU6-506P-201ENST00000516553 94 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 CENPUP1-201ENST00000526649 1202 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 AC007375.1-201ENST00000554513 578 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 HSBP1P1-201ENST00000555205 166 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.87□□□□□ -2.11
VPS39Q96JC1 AC092747.3-201ENST00000603769 301 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 AC103810.8-201ENST00000607347 118 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 AC015540.1-201ENST00000615828 501 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 AC005858.4-201ENST00000623191 700 ntBASIC1.87□□□□□ -2.11
VPS39Q96JC1 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
VPS39Q96JC1 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
VPS39Q96JC1 Y_RNA.99-201ENST00000363138 105 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 SNORA16.1-201ENST00000364597 132 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.86□□□□□ -2.11
VPS39Q96JC1 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.86□□□□□ -2.11
VPS39Q96JC1 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS39Q96JC1 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS39Q96JC1 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.86□□□□□ -2.11
VPS39Q96JC1 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 AC013470.1-201ENST00000453438 462 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.86□□□□□ -2.11
VPS39Q96JC1 AC083904.1-201ENST00000487828 231 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 AK3P2-201ENST00000507976 429 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 AC008834.1-201ENST00000511612 175 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 RNU5F-2P-201ENST00000516066 82 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 SNORA14.1-201ENST00000516113 141 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 AC016957.1-201ENST00000534895 309 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 AC027807.1-201ENST00000559921 996 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.86□□□□□ -2.11
VPS39Q96JC1 AC091135.1-201ENST00000585943 307 ntBASIC1.86□□□□□ -2.11
VPS39Q96JC1 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
VPS39Q96JC1 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.86□□□□□ -2.11
VPS39Q96JC1 RNU6-43P-201ENST00000384302 107 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 AL590002.1-201ENST00000406554 418 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 RNU6-908P-201ENST00000410160 94 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.85□□□□□ -2.11
VPS39Q96JC1 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.85□□□□□ -2.11
VPS39Q96JC1 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.85□□□□□ -2.11
VPS39Q96JC1 RN7SL429P-201ENST00000479090 223 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 RN7SL489P-201ENST00000486185 223 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 RN7SL327P-201ENST00000488659 223 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 AC093259.1-201ENST00000509755 300 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS39Q96JC1 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.85□□□□□ -2.11
VPS39Q96JC1 RNU6-1281P-201ENST00000516223 105 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 AP005597.4-201ENST00000526762 229 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.85□□□□□ -2.11
VPS39Q96JC1 HMGB1P33-201ENST00000563485 527 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 AC010525.2-201ENST00000590920 195 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 AC092807.2-201ENST00000609367 243 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 AC064836.2-201ENST00000609491 462 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 RN7SL853P-201ENST00000617250 223 ntBASIC1.85□□□□□ -2.11
VPS39Q96JC1 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.85□□□□□ -2.11
VPS39Q96JC1 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
VPS39Q96JC1 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
VPS39Q96JC1 RNU6-623P-201ENST00000363143 105 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 RNU6-1285P-201ENST00000363480 105 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 Y_RNA.516-201ENST00000384541 124 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 Y_RNA.615-201ENST00000410769 117 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS39Q96JC1 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS39Q96JC1 AC107393.1-201ENST00000512403 346 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 RNU6-189P-201ENST00000516120 101 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 RNU1-41P-201ENST00000516161 162 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 RNU1-48P-201ENST00000516400 162 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 SNORA44.1-201ENST00000517031 108 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS39Q96JC1 AC104576.1-201ENST00000524225 88 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 CBX3P4-201ENST00000538909 354 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 MIR5692C1-201ENST00000585309 91 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms