Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SNORA31.16-201ENST00000516773 139 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 RNU2-19P-201ENST00000517288 84 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 AC087854.1-201ENST00000519706 414 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 NDUFA5P6-201ENST00000542110 379 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 AC018630.3-201ENST00000542637 96 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 AL157687.1-201ENST00000554853 619 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 MIR3136-201ENST00000583498 78 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 AP001836.1-201ENST00000604675 523 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 AC018889.1-201ENST00000605372 397 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 RNU6-89P-201ENST00000606519 100 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
SKA3Q8IX90 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 AC063943.3-201ENST00000615562 356 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 FER-210ENST00000628534 558 ntTSL 5 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 Y_RNA.3-201ENST00000362331 103 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 RNY3P3-201ENST00000363816 102 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SKA3Q8IX90 MIR181A1-201ENST00000385026 110 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 EIF4E2P1-201ENST00000393781 255 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 RN7SKP61-201ENST00000410642 295 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 RNU2-48P-201ENST00000410694 191 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 RNA5SP489-201ENST00000410986 109 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.71□□□□□ -2.14
SKA3Q8IX90 AL590135.1-201ENST00000422215 156 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC019205.3-201ENST00000424573 156 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 RPL23AP95-201ENST00000426806 265 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 MRPS10P2-201ENST00000431226 381 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 MTND3P21-201ENST00000433774 331 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC016700.2-201ENST00000446011 156 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC015911.1-201ENST00000495111 156 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC145146.1-201ENST00000496370 254 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.71□□□□□ -2.14
SKA3Q8IX90 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.71□□□□□ -2.14
SKA3Q8IX90 Y_RNA.665-201ENST00000516177 98 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 RNA5SP137-201ENST00000516833 135 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC107953.1-201ENST00000522216 297 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC022616.8-201ENST00000533569 253 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC026271.5-201ENST00000577873 130 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 MIR4287-201ENST00000579398 78 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 MIR3945-201ENST00000581853 98 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 DISC2.1-201ENST00000612827 205 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.71□□□□□ -2.14
SKA3Q8IX90 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 MIR1321-201ENST00000637766 79 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SKA3Q8IX90 AC092881.1-201ENST00000638218 2733 ntBASIC1.71□□□□□ -2.14
SKA3Q8IX90 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
SKA3Q8IX90 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
SKA3Q8IX90 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.7□□□□□ -2.14
SKA3Q8IX90 AP000560.1-201ENST00000624150 1937 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
SKA3Q8IX90 AC092268.1-201ENST00000342691 405 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 Y_RNA.38-201ENST00000362617 102 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 RNU6-743P-201ENST00000364151 106 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 Y_RNA.504-201ENST00000384481 104 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 RNU2-20P-201ENST00000410425 191 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 RPL31P63-201ENST00000422565 375 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 MTCO1P20-201ENST00000425366 358 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 C8orf59P1-201ENST00000429930 303 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.7□□□□□ -2.14
SKA3Q8IX90 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.7□□□□□ -2.14
SKA3Q8IX90 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.7□□□□□ -2.14
SKA3Q8IX90 RN7SL429P-201ENST00000479090 223 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.7□□□□□ -2.14
SKA3Q8IX90 AC107032.1-201ENST00000485945 480 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 RN7SL489P-201ENST00000486185 223 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 AC083904.1-201ENST00000487828 231 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 RN7SL327P-201ENST00000488659 223 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 AC022447.4-201ENST00000504053 364 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 MRPS17P9-201ENST00000511924 393 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.7□□□□□ -2.14
SKA3Q8IX90 AC109635.3-201ENST00000529536 185 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 TPRKBP2-201ENST00000565969 475 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 AL109918.3-201ENST00000603072 338 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 AC064836.2-201ENST00000609491 462 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 RN7SL853P-201ENST00000617250 223 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
SKA3Q8IX90 MTND4P23-201ENST00000447723 1363 ntBASIC1.7□□□□□ -2.14
SKA3Q8IX90 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.69□□□□□ -2.14
SKA3Q8IX90 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SKA3Q8IX90 RNU4-15P-201ENST00000362613 141 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 Y_RNA.256-201ENST00000364594 104 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 RNU6-1329P-201ENST00000365664 107 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 Y_RNA.516-201ENST00000384541 124 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
SKA3Q8IX90 SNORA12-201ENST00000391162 147 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 HMGN2P39-201ENST00000398005 273 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 AP000275.1-201ENST00000411943 390 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.69□□□□□ -2.14
SKA3Q8IX90 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.69□□□□□ -2.14
SKA3Q8IX90 IFNA20P-201ENST00000436840 528 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 173.7 ms