Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 U2.9-201ENST00000615427 191 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 AL138880.2-201ENST00000616214 239 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 U2.11-201ENST00000616345 191 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 U2.2-201ENST00000616535 191 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 MIR6875-201ENST00000617506 72 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 U2.3-201ENST00000617785 191 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 AC005562.2-201ENST00000618264 111 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 U2.19-201ENST00000618602 191 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 RNU2-1-201ENST00000618664 191 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 U2.6-201ENST00000619225 191 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 U2.5-201ENST00000619465 191 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 U2.10-201ENST00000620268 191 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 AC068724.3-201ENST00000625906 87 ntBASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
UBE3DQ7Z6J8 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 RNU6-727P-201ENST00000363592 107 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 Y_RNA.182-201ENST00000363880 111 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 AL591034.1-201ENST00000407447 340 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 RPS20P10-201ENST00000451209 253 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 RNU7-23P-201ENST00000459465 62 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 RNU6-313P-201ENST00000516317 112 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 SCARNA14-201ENST00000516903 136 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 AL606490.9-201ENST00000603331 271 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 HSPE1P7-201ENST00000604681 321 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 AC084757.4-201ENST00000616350 526 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 AC002076.2-201ENST00000617362 122 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 AC068205.3-201ENST00000636385 468 ntBASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
UBE3DQ7Z6J8 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 SNORD114-19-201ENST00000363072 75 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 U3.9-201ENST00000363823 204 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 Y_RNA.215-201ENST00000364204 112 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 U1.1-201ENST00000384101 164 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 RNU6-239P-201ENST00000390990 99 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 RNU6-381P-201ENST00000391259 108 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 HSPE1P26-201ENST00000405341 275 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 RNA5SP239-201ENST00000410218 129 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 AL714022.1-201ENST00000439897 151 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 AC091179.1-201ENST00000461606 579 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 RPL30P14-201ENST00000482744 348 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 MIR2116-201ENST00000517221 80 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 AL360157.1-201ENST00000565962 87 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 RN7SL703P-201ENST00000578485 302 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 Y_RNA.778-201ENST00000620203 90 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 AC091895.1-201ENST00000624494 256 ntBASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.66□□□□□ -1.82
UBE3DQ7Z6J8 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.65□□□□□ -1.82
UBE3DQ7Z6J8 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.65□□□□□ -1.82
UBE3DQ7Z6J8 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.65□□□□□ -1.82
UBE3DQ7Z6J8 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
UBE3DQ7Z6J8 RNU6-324P-201ENST00000363957 106 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 Y_RNA.415-201ENST00000384012 112 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 RNU6-376P-201ENST00000384731 106 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 RNU6-763P-201ENST00000390865 106 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 AC023141.4-201ENST00000412031 328 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 SNORA71B-202ENST00000439232 272 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 snoU13.28-201ENST00000459235 104 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 RN7SL132P-201ENST00000478131 296 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 RAC1P2-201ENST00000511164 579 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 MIR3160-1-201ENST00000577972 85 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 MIR5688-201ENST00000580619 83 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 RPL17P51-201ENST00000605218 238 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.65□□□□□ -1.83
UBE3DQ7Z6J8 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 531.5 ms