Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 AC096649.2-201ENST00000416186 393 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 AL139132.1-201ENST00000431587 344 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 CST9LP2-201ENST00000437612 320 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 RNU7-169P-201ENST00000459456 61 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 AP001324.2-201ENST00000461163 319 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 RN7SL75P-201ENST00000461926 281 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 RPL30P12-201ENST00000474666 353 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 RN7SL499P-201ENST00000481141 276 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 GZMAP1-201ENST00000503054 631 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 MRPS36P2-201ENST00000512569 299 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 RNU1-143P-201ENST00000516296 146 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 AC131281.1-201ENST00000522984 164 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 AL391813.1-201ENST00000603098 260 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 U1.23-201ENST00000610293 146 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 MIR8076-201ENST00000611401 83 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 RNU1-68P-201ENST00000615382 146 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 U1.39-201ENST00000621562 146 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 MIR4272-201ENST00000635924 64 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 RNU6-227P-201ENST00000362865 103 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 Y_RNA.123-201ENST00000363338 102 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 SNORD14.1-201ENST00000365609 90 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 Y_RNA.533-201ENST00000384596 114 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 DYNLT3P2-201ENST00000442517 295 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 RPS29P26-201ENST00000477483 171 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 RNU6-475P-201ENST00000516073 104 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 MIR5188-201ENST00000583467 113 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 AC104984.5-201ENST00000586878 94 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 AL158827.2-201ENST00000602494 330 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 MIR1244-1-201ENST00000612829 85 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 AC024581.2-201ENST00000619986 252 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 UCA1.1-201ENST00000620952 75 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 AL691447.3-201ENST00000635020 330 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 MIR1244-3-201ENST00000635744 85 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 MIR1244-2-201ENST00000636449 85 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 MIR1244-4-202ENST00000636813 85 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 MIR3529-201ENST00000637713 78 ntBASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.16□□□□□ -1.9
SLC44A4Q53GD3 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.15□□□□□ -1.9
SLC44A4Q53GD3 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
SLC44A4Q53GD3 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
SLC44A4Q53GD3 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.15□□□□□ -1.9
SLC44A4Q53GD3 AL136360.1-201ENST00000503377 1900 ntBASIC3.15□□□□□ -1.9
SLC44A4Q53GD3 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 Y_RNA.396-201ENST00000383949 103 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 Y_RNA.476-201ENST00000384347 108 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 RNU6-748P-201ENST00000384648 107 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 Y_RNA.577-201ENST00000384794 101 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 RNU6-1245P-201ENST00000411130 106 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 USP9YP16-201ENST00000430287 407 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AL135938.1-201ENST00000443141 297 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AC009296.1-201ENST00000443146 155 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 USP9YP23-201ENST00000455085 407 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 SNORA25.11-201ENST00000515935 105 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 SNORA31.6-201ENST00000516241 130 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AC022616.4-201ENST00000522985 181 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AL021879.1-201ENST00000611756 288 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 HMGB1P24-202ENST00000615653 685 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AC009487.2-201ENST00000420969 6821 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AC108206.1-201ENST00000570186 4159 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AC091564.4-201ENST00000533934 2194 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 AC008669.1-201ENST00000565823 2178 ntBASIC3.15□□□□□ -1.91
SLC44A4Q53GD3 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 SNORD50.1-201ENST00000362987 71 ntBASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 Y_RNA.222-201ENST00000364264 102 ntBASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 RNU4-42P-201ENST00000364738 142 ntBASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 RNU6-622P-201ENST00000384272 103 ntBASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 SNORD67-201ENST00000390833 111 ntBASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 MIR1252-201ENST00000408861 65 ntBASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 AP000275.1-201ENST00000411943 390 ntBASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 AC104332.2-201ENST00000429959 156 ntBASIC3.14□□□□□ -1.91
SLC44A4Q53GD3 AC124916.1-201ENST00000444020 547 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms