Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNA5SP475-201ENST00000410568 110 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 RN7SKP53-201ENST00000411337 315 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 AC019205.3-201ENST00000424573 156 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 RPS20P10-201ENST00000451209 253 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 AP000873.1-201ENST00000463987 400 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 RPS27AP10-201ENST00000496103 208 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 AC025445.1-201ENST00000502728 300 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX4Q06945 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.92□□□□□ -1.78
SOX4Q06945 SNORA31.16-201ENST00000516773 139 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 AP002001.1-203ENST00000534002 267 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX4Q06945 AC009127.3-201ENST00000570531 403 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 AL391261.4-201ENST00000616012 481 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 MIR3674-201ENST00000636576 68 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 U6.105-201ENST00000637379 88 ntBASIC3.92□□□□□ -1.78
SOX4Q06945 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX4Q06945 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
SOX4Q06945 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
SOX4Q06945 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SOX4Q06945 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
SOX4Q06945 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.92□□□□□ -1.78
SOX4Q06945 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.92□□□□□ -1.78
SOX4Q06945 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
SOX4Q06945 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SOX4Q06945 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SOX4Q06945 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
SOX4Q06945 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.91□□□□□ -1.78
SOX4Q06945 RNU6-799P-201ENST00000363567 107 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 RNU6-275P-201ENST00000364910 107 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 Y_RNA.329-201ENST00000365209 107 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 RNU6-245P-201ENST00000384020 107 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 RNA5SP390-201ENST00000410191 113 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX4Q06945 CYCSP4-201ENST00000429682 331 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX4Q06945 CR769767.1-201ENST00000436337 346 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 RPL26P9-201ENST00000457466 433 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 ADAM3A-203ENST00000461344 2157 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 RN7SL293P-201ENST00000481765 281 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX4Q06945 RPS26P15-201ENST00000488067 348 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX4Q06945 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SOX4Q06945 Y_RNA.797-201ENST00000515977 94 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.91□□□□□ -1.78
SOX4Q06945 MIR548X2-201ENST00000579776 100 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 U3.45-201ENST00000607547 219 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.91□□□□□ -1.78
SOX4Q06945 AC012314.7-201ENST00000619693 93 ntBASIC3.91□□□□□ -1.78
SOX4Q06945 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.91□□□□□ -1.78
SOX4Q06945 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SOX4Q06945 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SOX4Q06945 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.91□□□□□ -1.78
SOX4Q06945 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SOX4Q06945 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SOX4Q06945 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SOX4Q06945 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SOX4Q06945 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
SOX4Q06945 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
SOX4Q06945 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
SOX4Q06945 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SOX4Q06945 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
SOX4Q06945 AC010332.2-201ENST00000613083 1904 ntBASIC3.9□□□□□ -1.78
SOX4Q06945 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
SOX4Q06945 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SOX4Q06945 RNU6-727P-201ENST00000363592 107 ntBASIC3.9□□□□□ -1.79
SOX4Q06945 RNA5SP205-201ENST00000364653 136 ntBASIC3.9□□□□□ -1.79
SOX4Q06945 MIR490-201ENST00000384865 128 ntBASIC3.9□□□□□ -1.79
SOX4Q06945 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.9□□□□□ -1.79
SOX4Q06945 U8.19-201ENST00000459095 133 ntBASIC3.9□□□□□ -1.79
SOX4Q06945 AC090525.1-201ENST00000479116 478 ntBASIC3.9□□□□□ -1.79
SOX4Q06945 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.9□□□□□ -1.79
SOX4Q06945 AC110768.1-201ENST00000509222 400 ntBASIC3.9□□□□□ -1.79
SOX4Q06945 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.9□□□□□ -1.79
SOX4Q06945 NACAP3-201ENST00000552100 481 ntBASIC3.9□□□□□ -1.79
SOX4Q06945 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC3.9□□□□□ -1.79
SOX4Q06945 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.9□□□□□ -1.79
SOX4Q06945 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.9□□□□□ -1.79
SOX4Q06945 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SOX4Q06945 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
SOX4Q06945 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
SOX4Q06945 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SOX4Q06945 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
SOX4Q06945 AC010733.2-201ENST00000589496 5702 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SOX4Q06945 Y_RNA.261-201ENST00000364631 102 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 MIR7-3-201ENST00000384898 110 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 SNORA40-201ENST00000388090 126 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 RNU6-763P-201ENST00000390865 106 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.89□□□□□ -1.79
SOX4Q06945 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.89□□□□□ -1.79
SOX4Q06945 CRYBB2P1-203ENST00000415709 538 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 AC096649.2-201ENST00000416186 393 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 EBAG9P1-201ENST00000418955 543 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC3.89□□□□□ -1.79
SOX4Q06945 HMGN2P10-201ENST00000448085 265 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 SNORD105B-201ENST00000458770 79 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms