Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
RNF4P78317 Y_RNA.217-201ENST00000364214 105 ntBASIC3.59□□□□□ -1.83
RNF4P78317 Y_RNA.506-201ENST00000384494 102 ntBASIC3.59□□□□□ -1.83
RNF4P78317 RNU6-918P-201ENST00000391219 106 ntBASIC3.59□□□□□ -1.83
RNF4P78317 MIR320B2-201ENST00000408479 138 ntBASIC3.59□□□□□ -1.83
RNF4P78317 RNU6-1199P-201ENST00000411249 104 ntBASIC3.59□□□□□ -1.83
RNF4P78317 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.59□□□□□ -1.83
RNF4P78317 SNORA71B-202ENST00000439232 272 ntBASIC3.59□□□□□ -1.83
RNF4P78317 Y_RNA.641-201ENST00000459414 105 ntBASIC3.59□□□□□ -1.83
RNF4P78317 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.59□□□□□ -1.83
RNF4P78317 RNU6-191P-201ENST00000516295 94 ntBASIC3.59□□□□□ -1.83
RNF4P78317 RNU6-107P-201ENST00000516643 102 ntBASIC3.59□□□□□ -1.83
RNF4P78317 RNU6-1231P-201ENST00000517185 103 ntBASIC3.59□□□□□ -1.83
RNF4P78317 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.59□□□□□ -1.83
RNF4P78317 SNRPGP20-201ENST00000604477 205 ntBASIC3.59□□□□□ -1.83
RNF4P78317 AC018692.3-201ENST00000623929 123 ntBASIC3.59□□□□□ -1.83
RNF4P78317 MIR3674-201ENST00000636576 68 ntBASIC3.59□□□□□ -1.83
RNF4P78317 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.59□□□□□ -1.84
RNF4P78317 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.59□□□□□ -1.84
RNF4P78317 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.84
RNF4P78317 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
RNF4P78317 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
RNF4P78317 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
RNF4P78317 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
RNF4P78317 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
RNF4P78317 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
RNF4P78317 RNU1-62P-201ENST00000362599 164 ntBASIC3.58□□□□□ -1.84
RNF4P78317 RNU6-1010P-201ENST00000362757 107 ntBASIC3.58□□□□□ -1.84
RNF4P78317 SNORD114-19-201ENST00000363072 75 ntBASIC3.58□□□□□ -1.84
RNF4P78317 Y_RNA.233-201ENST00000364407 101 ntBASIC3.58□□□□□ -1.84
RNF4P78317 MIR30B-201ENST00000384850 88 ntBASIC3.58□□□□□ -1.84
RNF4P78317 MIR199A2-201ENST00000385289 110 ntBASIC3.58□□□□□ -1.84
RNF4P78317 AC004866.1-201ENST00000411748 78 ntBASIC3.58□□□□□ -1.84
RNF4P78317 AIMP1P2-201ENST00000425294 312 ntBASIC3.58□□□□□ -1.84
RNF4P78317 AC027124.2-201ENST00000428249 105 ntBASIC3.58□□□□□ -1.84
RNF4P78317 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.58□□□□□ -1.84
RNF4P78317 RPL23AP70-201ENST00000483361 460 ntBASIC3.58□□□□□ -1.84
RNF4P78317 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.58□□□□□ -1.84
RNF4P78317 AC026726.1-201ENST00000512859 601 ntBASIC3.58□□□□□ -1.84
RNF4P78317 Y_RNA.662-201ENST00000516028 97 ntBASIC3.58□□□□□ -1.84
RNF4P78317 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.58□□□□□ -1.84
RNF4P78317 TGIF1P1-201ENST00000558095 802 ntBASIC3.58□□□□□ -1.84
RNF4P78317 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.58□□□□□ -1.84
RNF4P78317 AC011471.1-201ENST00000585766 187 ntBASIC3.58□□□□□ -1.84
RNF4P78317 RNU6-91P-201ENST00000607774 107 ntBASIC3.58□□□□□ -1.84
RNF4P78317 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.58□□□□□ -1.84
RNF4P78317 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.58□□□□□ -1.84
RNF4P78317 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.58□□□□□ -1.84
RNF4P78317 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.58□□□□□ -1.84
RNF4P78317 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.58□□□□□ -1.84
RNF4P78317 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
RNF4P78317 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.58□□□□□ -1.84
RNF4P78317 UBE3AP2-201ENST00000429033 2259 ntBASIC3.58□□□□□ -1.84
RNF4P78317 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
RNF4P78317 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
RNF4P78317 IPO8P1-201ENST00000455509 3109 ntBASIC3.57□□□□□ -1.84
RNF4P78317 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.57□□□□□ -1.84
RNF4P78317 RNU4-15P-201ENST00000362613 141 ntBASIC3.57□□□□□ -1.84
RNF4P78317 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
RNF4P78317 RNU6-750P-201ENST00000390946 107 ntBASIC3.57□□□□□ -1.84
RNF4P78317 RNA5SP201-201ENST00000410316 124 ntBASIC3.57□□□□□ -1.84
RNF4P78317 RN7SKP202-201ENST00000410439 330 ntBASIC3.57□□□□□ -1.84
RNF4P78317 RNA5SP306-201ENST00000411087 107 ntBASIC3.57□□□□□ -1.84
RNF4P78317 AC145146.1-201ENST00000496370 254 ntBASIC3.57□□□□□ -1.84
RNF4P78317 DEFB131C-201ENST00000528817 165 ntBASIC3.57□□□□□ -1.84
RNF4P78317 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.57□□□□□ -1.84
RNF4P78317 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.57□□□□□ -1.84
RNF4P78317 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.57□□□□□ -1.84
RNF4P78317 MIR4308-201ENST00000580634 81 ntBASIC3.57□□□□□ -1.84
RNF4P78317 MIR3910-1-201ENST00000580936 111 ntBASIC3.57□□□□□ -1.84
RNF4P78317 AC012493.2-201ENST00000595083 291 ntBASIC3.57□□□□□ -1.84
RNF4P78317 PCGEM1.1-201ENST00000613431 131 ntBASIC3.57□□□□□ -1.84
RNF4P78317 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
RNF4P78317 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.57□□□□□ -1.84
RNF4P78317 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
RNF4P78317 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
RNF4P78317 SNORD87-201ENST00000364849 89 ntBASIC3.56□□□□□ -1.84
RNF4P78317 MIR186-201ENST00000384988 86 ntBASIC3.56□□□□□ -1.84
RNF4P78317 AP000567.1-201ENST00000406413 156 ntBASIC3.56□□□□□ -1.84
RNF4P78317 RNU2-54P-201ENST00000410299 190 ntBASIC3.56□□□□□ -1.84
RNF4P78317 CYCSP19-201ENST00000411715 316 ntBASIC3.56□□□□□ -1.84
RNF4P78317 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.56□□□□□ -1.84
RNF4P78317 HMGN2P20-201ENST00000437531 273 ntBASIC3.56□□□□□ -1.84
RNF4P78317 AC112771.1-201ENST00000463581 102 ntBASIC3.56□□□□□ -1.84
RNF4P78317 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.56□□□□□ -1.84
RNF4P78317 RNA5SP164-201ENST00000516533 110 ntBASIC3.56□□□□□ -1.84
RNF4P78317 RNU1-117P-201ENST00000517041 158 ntBASIC3.56□□□□□ -1.84
RNF4P78317 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.56□□□□□ -1.84
RNF4P78317 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.56□□□□□ -1.84
RNF4P78317 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
RNF4P78317 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.56□□□□□ -1.84
RNF4P78317 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.56□□□□□ -1.84
RNF4P78317 AL138880.2-201ENST00000616214 239 ntBASIC3.56□□□□□ -1.84
RNF4P78317 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.56□□□□□ -1.84
RNF4P78317 snoU18.1-201ENST00000629629 71 ntBASIC3.56□□□□□ -1.84
RNF4P78317 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
RNF4P78317 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.56□□□□□ -1.84
RNF4P78317 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.56□□□□□ -1.84
RNF4P78317 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
RNF4P78317 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms