Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AL591034.2-201ENST00000402839 359 ntBASIC2.22□□□□□ -2.05
LMO4P61968 RNU6-1156P-201ENST00000410365 100 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AC096649.2-201ENST00000416186 393 ntBASIC2.22□□□□□ -2.05
LMO4P61968 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.22□□□□□ -2.05
LMO4P61968 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.22□□□□□ -2.05
LMO4P61968 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.22□□□□□ -2.05
LMO4P61968 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.22□□□□□ -2.05
LMO4P61968 NDUFB1P2-201ENST00000449477 176 ntBASIC2.22□□□□□ -2.05
LMO4P61968 RPS3P1-201ENST00000456781 192 ntBASIC2.22□□□□□ -2.05
LMO4P61968 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.22□□□□□ -2.05
LMO4P61968 RNU6-1037P-201ENST00000459571 107 ntBASIC2.22□□□□□ -2.05
LMO4P61968 RPL23AP45-201ENST00000476406 468 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AP004217.1-201ENST00000480579 346 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AC139453.3-201ENST00000493276 369 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.22□□□□□ -2.05
LMO4P61968 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.22□□□□□ -2.05
LMO4P61968 Y_RNA.668-201ENST00000516233 93 ntBASIC2.22□□□□□ -2.05
LMO4P61968 Y_RNA.687-201ENST00000516558 91 ntBASIC2.22□□□□□ -2.05
LMO4P61968 RNU6-56P-201ENST00000516986 93 ntBASIC2.22□□□□□ -2.05
LMO4P61968 RNU6-1271P-201ENST00000517049 105 ntBASIC2.22□□□□□ -2.05
LMO4P61968 SNORA31.19-201ENST00000517079 126 ntBASIC2.22□□□□□ -2.05
LMO4P61968 RNU6-794P-201ENST00000517261 64 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AC026241.1-201ENST00000517873 2142 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AC022616.4-201ENST00000522985 181 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.22□□□□□ -2.05
LMO4P61968 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.22□□□□□ -2.05
LMO4P61968 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.22□□□□□ -2.05
LMO4P61968 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.22□□□□□ -2.05
LMO4P61968 MIR4273-201ENST00000582824 84 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AL355297.3-201ENST00000604082 446 ntBASIC2.22□□□□□ -2.05
LMO4P61968 Z98751.3-201ENST00000604447 521 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.22□□□□□ -2.05
LMO4P61968 AL021879.1-201ENST00000611756 288 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AC107871.2-201ENST00000612894 502 ntBASIC2.22□□□□□ -2.05
LMO4P61968 MIR6817-201ENST00000615588 66 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AC007792.1-201ENST00000623023 402 ntBASIC2.22□□□□□ -2.05
LMO4P61968 AC243829.7-201ENST00000633081 225 ntBASIC2.22□□□□□ -2.05
LMO4P61968 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.22□□□□□ -2.05
LMO4P61968 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
LMO4P61968 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.22□□□□□ -2.05
LMO4P61968 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.21□□□□□ -2.05
LMO4P61968 SNORD14.1-201ENST00000365609 90 ntBASIC2.21□□□□□ -2.06
LMO4P61968 Y_RNA.380-201ENST00000365663 111 ntBASIC2.21□□□□□ -2.06
LMO4P61968 RNU6-784P-201ENST00000384330 106 ntBASIC2.21□□□□□ -2.06
LMO4P61968 MT-TR-201ENST00000387439 65 ntBASIC2.21□□□□□ -2.06
LMO4P61968 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
LMO4P61968 RNU6-750P-201ENST00000390946 107 ntBASIC2.21□□□□□ -2.06
LMO4P61968 SNORA40C-201ENST00000391285 128 ntBASIC2.21□□□□□ -2.06
LMO4P61968 MIR1252-201ENST00000408861 65 ntBASIC2.21□□□□□ -2.06
LMO4P61968 AC023141.4-201ENST00000412031 328 ntBASIC2.21□□□□□ -2.06
LMO4P61968 AL627311.1-201ENST00000431514 115 ntBASIC2.21□□□□□ -2.06
LMO4P61968 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.21□□□□□ -2.06
LMO4P61968 UBBP3-201ENST00000445497 241 ntBASIC2.21□□□□□ -2.06
LMO4P61968 HIGD1AP2-201ENST00000446367 280 ntBASIC2.21□□□□□ -2.06
LMO4P61968 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.21□□□□□ -2.06
LMO4P61968 MTATP6P7-201ENST00000453315 681 ntBASIC2.21□□□□□ -2.06
LMO4P61968 RPL9P9-202ENST00000466501 579 ntBASIC2.21□□□□□ -2.06
LMO4P61968 RPL22P13-201ENST00000493291 347 ntBASIC2.21□□□□□ -2.06
LMO4P61968 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.21□□□□□ -2.06
LMO4P61968 SNORA40.14-201ENST00000516543 86 ntBASIC2.21□□□□□ -2.06
LMO4P61968 Y_RNA.715-201ENST00000517082 110 ntBASIC2.21□□□□□ -2.06
LMO4P61968 AC040926.1-201ENST00000530195 238 ntBASIC2.21□□□□□ -2.06
LMO4P61968 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.21□□□□□ -2.06
LMO4P61968 MYL12BP1-201ENST00000569826 507 ntBASIC2.21□□□□□ -2.06
LMO4P61968 AC008121.1-201ENST00000603244 268 ntBASIC2.21□□□□□ -2.06
LMO4P61968 AC019159.1-201ENST00000605094 187 ntBASIC2.21□□□□□ -2.06
LMO4P61968 AC100812.1-201ENST00000607622 580 ntBASIC2.21□□□□□ -2.06
LMO4P61968 AC005046.1-201ENST00000608515 625 ntBASIC2.21□□□□□ -2.06
LMO4P61968 MIR1244-1-201ENST00000612829 85 ntBASIC2.21□□□□□ -2.06
LMO4P61968 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.21□□□□□ -2.06
LMO4P61968 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.21□□□□□ -2.06
LMO4P61968 MIR1244-3-201ENST00000635744 85 ntBASIC2.21□□□□□ -2.06
LMO4P61968 MIR1244-2-201ENST00000636449 85 ntBASIC2.21□□□□□ -2.06
LMO4P61968 MIR1244-4-202ENST00000636813 85 ntBASIC2.21□□□□□ -2.06
LMO4P61968 U6.99-201ENST00000637524 83 ntBASIC2.21□□□□□ -2.06
LMO4P61968 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
LMO4P61968 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
LMO4P61968 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
LMO4P61968 MTND5P27-201ENST00000428871 1720 ntBASIC2.2□□□□□ -2.06
LMO4P61968 SNORD56.5-201ENST00000364281 72 ntBASIC2.2□□□□□ -2.06
LMO4P61968 Y_RNA.396-201ENST00000383949 103 ntBASIC2.2□□□□□ -2.06
LMO4P61968 RNU6-166P-201ENST00000384371 107 ntBASIC2.2□□□□□ -2.06
LMO4P61968 Y_RNA.556-201ENST00000384677 113 ntBASIC2.2□□□□□ -2.06
LMO4P61968 MIR521-1-201ENST00000384902 87 ntBASIC2.2□□□□□ -2.06
LMO4P61968 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
LMO4P61968 RPL21P1-201ENST00000399532 476 ntBASIC2.2□□□□□ -2.06
LMO4P61968 AC007560.1-201ENST00000426912 237 ntBASIC2.2□□□□□ -2.06
LMO4P61968 RPS15AP10-201ENST00000432472 382 ntBASIC2.2□□□□□ -2.06
LMO4P61968 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.2□□□□□ -2.06
LMO4P61968 AL513328.1-201ENST00000446460 224 ntBASIC2.2□□□□□ -2.06
LMO4P61968 PCNPP5-201ENST00000452246 481 ntBASIC2.2□□□□□ -2.06
LMO4P61968 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.2□□□□□ -2.06
LMO4P61968 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.2□□□□□ -2.06
LMO4P61968 AC092185.1-201ENST00000491371 97 ntBASIC2.2□□□□□ -2.06
LMO4P61968 RNA5SP282-201ENST00000516355 108 ntBASIC2.2□□□□□ -2.06
LMO4P61968 SNORA9.3-201ENST00000516383 129 ntBASIC2.2□□□□□ -2.06
LMO4P61968 RNA5SP148-201ENST00000516527 94 ntBASIC2.2□□□□□ -2.06
LMO4P61968 RNU7-4P-201ENST00000516961 62 ntBASIC2.2□□□□□ -2.06
LMO4P61968 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.2□□□□□ -2.06
LMO4P61968 AC103996.1-201ENST00000555468 102 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms