Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC002553.4-201ENST00000616896 331 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 AC103705.1-201ENST00000619013 241 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
TNFRSF4P43489 snoU2_19.1-201ENST00000362361 80 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 RNU6-1252P-201ENST00000363054 104 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 EIF4E2P1-201ENST00000393781 255 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 RNA5SP118-201ENST00000410385 109 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 RNU6-293P-201ENST00000411259 106 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 AC009161.1-201ENST00000417306 376 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.04□□□□□ -2.08
TNFRSF4P43489 AL590556.1-201ENST00000423231 483 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 SRIP2-201ENST00000428470 166 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.04□□□□□ -2.08
TNFRSF4P43489 AL603825.1-201ENST00000438481 80 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.04□□□□□ -2.08
TNFRSF4P43489 RNU7-138P-201ENST00000459479 64 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 AC018868.1-201ENST00000491307 315 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 AC069439.1-201ENST00000494739 167 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.04□□□□□ -2.08
TNFRSF4P43489 RNA5SP137-201ENST00000516833 135 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 AC115990.1-201ENST00000526957 301 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 AC025423.5-201ENST00000550230 219 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.04□□□□□ -2.08
TNFRSF4P43489 AC026271.5-201ENST00000577873 130 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 MIR5002-201ENST00000584713 97 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 BNIP3P25-201ENST00000596023 559 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.04□□□□□ -2.08
TNFRSF4P43489 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
TNFRSF4P43489 AC090617.10-201ENST00000624308 134 ntBASIC2.04□□□□□ -2.08
TNFRSF4P43489 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
TNFRSF4P43489 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
TNFRSF4P43489 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
TNFRSF4P43489 RNU6-336P-201ENST00000364891 107 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 RNU2-32P-201ENST00000411193 191 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.03□□□□□ -2.08
TNFRSF4P43489 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.03□□□□□ -2.08
TNFRSF4P43489 AC027124.2-201ENST00000428249 105 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 MTND1P2-201ENST00000430604 821 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.03□□□□□ -2.08
TNFRSF4P43489 FGF7P6-202ENST00000451282 293 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 AL353752.1-201ENST00000454946 260 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 AC007547.1-201ENST00000462177 490 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 AC104435.1-201ENST00000483483 166 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 RNA5SP458-201ENST00000516188 119 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 COPS8P3-201ENST00000526024 482 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 MIR5692C1-201ENST00000585309 91 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 BNIP3P16-201ENST00000589779 534 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 AL031274.2-201ENST00000599419 203 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.03□□□□□ -2.08
TNFRSF4P43489 CTHRC1P1-201ENST00000605383 469 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 MIR6845-201ENST00000613182 61 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 AC093913.1-201ENST00000614178 329 ntBASIC2.03□□□□□ -2.08
TNFRSF4P43489 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.03□□□□□ -2.09
TNFRSF4P43489 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
TNFRSF4P43489 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
TNFRSF4P43489 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
TNFRSF4P43489 RNU6-428P-201ENST00000362942 107 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 Y_RNA.157-201ENST00000363638 102 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 RNU6-546P-201ENST00000383991 107 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 SNORA32.2-201ENST00000384049 122 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 SNORD73A-201ENST00000386062 65 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 AC243964.1-201ENST00000441814 261 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFRSF4P43489 AC013470.1-201ENST00000453438 462 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFRSF4P43489 RPS29P25-201ENST00000481709 171 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 AC008628.2-201ENST00000502605 298 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFRSF4P43489 AK3P2-201ENST00000507976 429 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.02□□□□□ -2.09
TNFRSF4P43489 RNU6-1069P-201ENST00000516612 133 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 RNU6-667P-201ENST00000517186 102 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 AC087854.1-201ENST00000519706 414 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFRSF4P43489 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.02□□□□□ -2.09
TNFRSF4P43489 NDUFA5P6-201ENST00000542110 379 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFRSF4P43489 MYL12BP1-201ENST00000569826 507 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 AC078899.2-201ENST00000595282 212 ntBASIC2.02□□□□□ -2.09
TNFRSF4P43489 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
TNFRSF4P43489 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
TNFRSF4P43489 Y_RNA.167-201ENST00000363735 109 ntBASIC2.01□□□□□ -2.09
TNFRSF4P43489 RNU6-827P-201ENST00000365553 106 ntBASIC2.01□□□□□ -2.09
TNFRSF4P43489 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
TNFRSF4P43489 SNORA6-201ENST00000384033 151 ntBASIC2.01□□□□□ -2.09
TNFRSF4P43489 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
TNFRSF4P43489 SNORA40.18-201ENST00000391200 128 ntBASIC2.01□□□□□ -2.09
TNFRSF4P43489 HMGB3P2-201ENST00000411913 584 ntBASIC2.01□□□□□ -2.09
TNFRSF4P43489 MTND1P23-201ENST00000416931 372 ntBASIC2.01□□□□□ -2.09
TNFRSF4P43489 AL117339.3-201ENST00000418733 162 ntBASIC2.01□□□□□ -2.09
TNFRSF4P43489 USP9YP28-201ENST00000435142 589 ntBASIC2.01□□□□□ -2.09
TNFRSF4P43489 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.01□□□□□ -2.09
TNFRSF4P43489 HMGB1P18-201ENST00000438801 619 ntBASIC2.01□□□□□ -2.09
TNFRSF4P43489 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.01□□□□□ -2.09
TNFRSF4P43489 SNRPGP7-201ENST00000469016 106 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 164 ms