Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNA5SP494-201ENST00000410653 129 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.21□□□□□ -1.9
SMARCA1P28370 UBBP3-201ENST00000445497 241 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 AC012308.1-201ENST00000451232 178 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.21□□□□□ -1.9
SMARCA1P28370 SNRPGP7-201ENST00000469016 106 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 AC003982.1-202ENST00000469928 248 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 AC107626.1-201ENST00000471084 183 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 GZMAP1-201ENST00000503054 631 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 AC091826.1-201ENST00000514065 313 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 RNU6-1137P-201ENST00000517073 99 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 AC079600.2-201ENST00000550076 130 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 MIR4513-201ENST00000581077 86 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 AC006504.6-201ENST00000590142 199 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 AC092447.9-201ENST00000603395 144 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 PART1_1.1-201ENST00000611761 217 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.21□□□□□ -1.9
SMARCA1P28370 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.21□□□□□ -1.9
SMARCA1P28370 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.21□□□□□ -1.9
SMARCA1P28370 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
SMARCA1P28370 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SMARCA1P28370 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SMARCA1P28370 RNU1-115P-201ENST00000365329 160 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 Y_RNA.422-201ENST00000384054 114 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.2□□□□□ -1.9
SMARCA1P28370 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 AC009296.1-201ENST00000443146 155 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 RPL39P29-201ENST00000447779 157 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 CHEK2P4-201ENST00000450340 246 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 AL513124.1-201ENST00000450410 614 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 HMGN1P10-201ENST00000474557 553 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.2□□□□□ -1.9
SMARCA1P28370 RN7SKP132-201ENST00000516001 208 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 RNU6-327P-201ENST00000516270 127 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 SNORA9.3-201ENST00000516383 129 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.2□□□□□ -1.9
SMARCA1P28370 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.2□□□□□ -1.9
SMARCA1P28370 ZNF861P-201ENST00000588126 639 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 AL356157.2-201ENST00000605122 111 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 AC116312.1-201ENST00000606841 314 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 MIR1244-1-201ENST00000612829 85 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 MIR1244-3-201ENST00000635744 85 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 MIR1244-2-201ENST00000636449 85 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 MIR1244-4-202ENST00000636813 85 ntBASIC3.2□□□□□ -1.9
SMARCA1P28370 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
SMARCA1P28370 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
SMARCA1P28370 Y_RNA.80-201ENST00000362996 102 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 RNU6-1141P-201ENST00000364520 107 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 RNU6-639P-201ENST00000384074 107 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 Y_RNA.485-201ENST00000384395 102 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 Y_RNA.510-201ENST00000384511 114 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 RNU6-1160P-201ENST00000384546 104 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 RNU6-1222P-201ENST00000384615 107 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 AL513477.1-202ENST00000417061 214 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 MTCO3P29-201ENST00000432119 779 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 Z82188.1-201ENST00000436709 154 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 AC099799.1-201ENST00000439809 192 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.19□□□□□ -1.9
SMARCA1P28370 AL441985.1-201ENST00000457727 251 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 RPL30P10-201ENST00000488148 337 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 SNORA25.10-201ENST00000515926 124 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 SCARNA17.1-201ENST00000516211 143 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 SCARNA17.2-201ENST00000516334 143 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 RNU4-77P-201ENST00000516692 156 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.19□□□□□ -1.9
SMARCA1P28370 HSPE1P4-201ENST00000550617 308 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 MIR3124-201ENST00000582636 67 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.19□□□□□ -1.9
SMARCA1P28370 AL355802.3-201ENST00000607571 545 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 uc_338.14-201ENST00000613162 166 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 SCARNA17.4-201ENST00000614296 143 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 AL450472.1-202ENST00000637286 180 ntBASIC3.19□□□□□ -1.9
SMARCA1P28370 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.19□□□□□ -1.9
SMARCA1P28370 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
SMARCA1P28370 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SMARCA1P28370 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.19□□□□□ -1.9
SMARCA1P28370 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
SMARCA1P28370 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SMARCA1P28370 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SMARCA1P28370 RNU6-874P-201ENST00000362390 105 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 RNU6-529P-201ENST00000363383 104 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 RNU6-1285P-201ENST00000363480 105 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 RNY3P11-201ENST00000364153 102 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 RNU1-112P-201ENST00000364401 164 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 Y_RNA.314-201ENST00000365114 102 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 Y_RNA.364-201ENST00000365532 101 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 Y_RNA.405-201ENST00000383979 100 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 RNU6-1083P-201ENST00000384022 107 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 Y_RNA.451-201ENST00000384200 100 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 Y_RNA.524-201ENST00000384564 100 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 Y_RNA.561-201ENST00000384694 100 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 MIR147B-201ENST00000390185 80 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 FO393413.1-201ENST00000402892 195 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 AP001324.2-201ENST00000461163 319 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 RPL23AP75-201ENST00000491601 451 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.18□□□□□ -1.9
SMARCA1P28370 AL590705.4-201ENST00000532209 134 ntBASIC3.18□□□□□ -1.9
SMARCA1P28370 GTF3AP2-201ENST00000557014 266 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms