Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL356157.2-201ENST00000605122 111 ntBASIC1.81□□□□□ -2.12
SDC1P18827 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.81□□□□□ -2.12
SDC1P18827 RMST_3.1-201ENST00000611651 109 ntBASIC1.81□□□□□ -2.12
SDC1P18827 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.81□□□□□ -2.12
SDC1P18827 SNORA43.4-201ENST00000629559 138 ntBASIC1.81□□□□□ -2.12
SDC1P18827 MTND4P23-201ENST00000447723 1363 ntBASIC1.81□□□□□ -2.12
SDC1P18827 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.81□□□□□ -2.12
SDC1P18827 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.8□□□□□ -2.12
SDC1P18827 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
SDC1P18827 SNORA36A-201ENST00000384221 132 ntBASIC1.8□□□□□ -2.12
SDC1P18827 RNU6-1215P-201ENST00000384441 102 ntBASIC1.8□□□□□ -2.12
SDC1P18827 SNORA46.1-201ENST00000391069 153 ntBASIC1.8□□□□□ -2.12
SDC1P18827 AL356379.1-201ENST00000414105 126 ntBASIC1.8□□□□□ -2.12
SDC1P18827 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.8□□□□□ -2.12
SDC1P18827 AC078809.1-201ENST00000427601 140 ntBASIC1.8□□□□□ -2.12
SDC1P18827 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.8□□□□□ -2.12
SDC1P18827 GPM6BP3-201ENST00000442797 145 ntBASIC1.8□□□□□ -2.12
SDC1P18827 HMGN2P26-201ENST00000463169 339 ntBASIC1.8□□□□□ -2.12
SDC1P18827 RN7SL274P-201ENST00000492268 272 ntBASIC1.8□□□□□ -2.12
SDC1P18827 AC092436.3-201ENST00000511788 257 ntBASIC1.8□□□□□ -2.12
SDC1P18827 AC010486.1-201ENST00000511793 424 ntBASIC1.8□□□□□ -2.12
SDC1P18827 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.8□□□□□ -2.12
SDC1P18827 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.8□□□□□ -2.12
SDC1P18827 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.8□□□□□ -2.12
SDC1P18827 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.8□□□□□ -2.12
SDC1P18827 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.8□□□□□ -2.12
SDC1P18827 AC078795.3-201ENST00000602913 472 ntBASIC1.8□□□□□ -2.12
SDC1P18827 CTHRC1P1-201ENST00000605383 469 ntBASIC1.8□□□□□ -2.12
SDC1P18827 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
SDC1P18827 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
SDC1P18827 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
SDC1P18827 ZNF355P-201ENST00000427301 3216 ntBASIC1.79□□□□□ -2.12
SDC1P18827 AC092268.1-201ENST00000342691 405 ntBASIC1.79□□□□□ -2.12
SDC1P18827 SNORD32B-201ENST00000364460 84 ntBASIC1.79□□□□□ -2.12
SDC1P18827 Y_RNA.402-201ENST00000383972 102 ntBASIC1.79□□□□□ -2.12
SDC1P18827 RNU6-142P-201ENST00000384019 107 ntBASIC1.79□□□□□ -2.12
SDC1P18827 RNU6-611P-201ENST00000384276 104 ntBASIC1.79□□□□□ -2.12
SDC1P18827 Y_RNA.504-201ENST00000384481 104 ntBASIC1.79□□□□□ -2.12
SDC1P18827 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
SDC1P18827 RNU6-1106P-201ENST00000390845 107 ntBASIC1.79□□□□□ -2.12
SDC1P18827 HMGN2P39-201ENST00000398005 273 ntBASIC1.79□□□□□ -2.12
SDC1P18827 MIR1262-201ENST00000408276 93 ntBASIC1.79□□□□□ -2.12
SDC1P18827 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.79□□□□□ -2.12
SDC1P18827 RNU4-26P-201ENST00000410270 107 ntBASIC1.79□□□□□ -2.12
SDC1P18827 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.79□□□□□ -2.12
SDC1P18827 AL590556.1-201ENST00000423231 483 ntBASIC1.79□□□□□ -2.12
SDC1P18827 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.79□□□□□ -2.12
SDC1P18827 CBX3P6-201ENST00000430257 527 ntBASIC1.79□□□□□ -2.12
SDC1P18827 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
SDC1P18827 AL137159.1-201ENST00000452808 512 ntBASIC1.79□□□□□ -2.12
SDC1P18827 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.79□□□□□ -2.12
SDC1P18827 RNU6-1037P-201ENST00000459571 107 ntBASIC1.79□□□□□ -2.12
SDC1P18827 RPS29P27-201ENST00000463711 170 ntBASIC1.79□□□□□ -2.12
SDC1P18827 AC055731.1-201ENST00000474387 401 ntBASIC1.79□□□□□ -2.12
SDC1P18827 AC016632.1-201ENST00000503994 196 ntBASIC1.79□□□□□ -2.12
SDC1P18827 RNU6-1332P-201ENST00000516666 104 ntBASIC1.79□□□□□ -2.12
SDC1P18827 RNU6-612P-201ENST00000516909 102 ntBASIC1.79□□□□□ -2.12
SDC1P18827 MTND1P35-201ENST00000526739 508 ntBASIC1.79□□□□□ -2.12
SDC1P18827 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.79□□□□□ -2.12
SDC1P18827 ANP32BP3-201ENST00000559213 706 ntBASIC1.79□□□□□ -2.12
SDC1P18827 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.79□□□□□ -2.12
SDC1P18827 SNRPGP17-201ENST00000603780 214 ntBASIC1.79□□□□□ -2.12
SDC1P18827 MIR1248-201ENST00000629190 106 ntBASIC1.79□□□□□ -2.12
SDC1P18827 AC024614.3-201ENST00000637860 256 ntBASIC1.79□□□□□ -2.12
SDC1P18827 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
SDC1P18827 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
SDC1P18827 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.78□□□□□ -2.12
SDC1P18827 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.78□□□□□ -2.12
SDC1P18827 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SDC1P18827 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SDC1P18827 Y_RNA.9-201ENST00000362354 101 ntBASIC1.78□□□□□ -2.12
SDC1P18827 RNY4P14-201ENST00000363656 96 ntBASIC1.78□□□□□ -2.12
SDC1P18827 RNU6-743P-201ENST00000364151 106 ntBASIC1.78□□□□□ -2.12
SDC1P18827 Y_RNA.373-201ENST00000365600 103 ntBASIC1.78□□□□□ -2.12
SDC1P18827 Y_RNA.450-201ENST00000384198 113 ntBASIC1.78□□□□□ -2.12
SDC1P18827 MIR17-201ENST00000385012 84 ntBASIC1.78□□□□□ -2.12
SDC1P18827 MTCO1P21-201ENST00000416634 589 ntBASIC1.78□□□□□ -2.12
SDC1P18827 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.78□□□□□ -2.12
SDC1P18827 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.78□□□□□ -2.12
SDC1P18827 PRELID3BP1-201ENST00000457142 540 ntBASIC1.78□□□□□ -2.12
SDC1P18827 AMD1P1-201ENST00000457220 922 ntBASIC1.78□□□□□ -2.12
SDC1P18827 SNORA59A-201ENST00000459326 152 ntBASIC1.78□□□□□ -2.12
SDC1P18827 RNU7-66P-201ENST00000459469 62 ntBASIC1.78□□□□□ -2.12
SDC1P18827 AC107032.1-201ENST00000485945 480 ntBASIC1.78□□□□□ -2.12
SDC1P18827 AC025465.4-201ENST00000513422 638 ntBASIC1.78□□□□□ -2.12
SDC1P18827 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.78□□□□□ -2.12
SDC1P18827 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.78□□□□□ -2.12
SDC1P18827 AC026271.5-201ENST00000577873 130 ntBASIC1.78□□□□□ -2.12
SDC1P18827 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.78□□□□□ -2.12
SDC1P18827 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.78□□□□□ -2.12
SDC1P18827 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SDC1P18827 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
SDC1P18827 AC092881.1-201ENST00000638218 2733 ntBASIC1.77□□□□□ -2.13
SDC1P18827 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
SDC1P18827 RNU6-254P-201ENST00000363377 107 ntBASIC1.77□□□□□ -2.13
SDC1P18827 RNU6-1317P-201ENST00000364582 104 ntBASIC1.77□□□□□ -2.13
SDC1P18827 SNORA16.1-201ENST00000364597 132 ntBASIC1.77□□□□□ -2.13
SDC1P18827 RNU4-12P-201ENST00000365233 139 ntBASIC1.77□□□□□ -2.13
SDC1P18827 MIR450B-201ENST00000401182 78 ntBASIC1.77□□□□□ -2.13
SDC1P18827 MTCYBP2-201ENST00000407745 171 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms