Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.55■□□□□ 0.24
COL8A1P27658 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL8A1P27658 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.55■□□□□ 0.24
COL8A1P27658 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
COL8A1P27658 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL8A1P27658 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.55■□□□□ 0.24
COL8A1P27658 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
COL8A1P27658 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.55■□□□□ 0.24
COL8A1P27658 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.55■□□□□ 0.24
COL8A1P27658 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.55■□□□□ 0.24
COL8A1P27658 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
COL8A1P27658 AL049796.1-201ENST00000565336 1766 ntBASIC16.55■□□□□ 0.24
COL8A1P27658 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL8A1P27658 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL8A1P27658 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
COL8A1P27658 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.55■□□□□ 0.24
COL8A1P27658 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.55■□□□□ 0.24
COL8A1P27658 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL8A1P27658 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL8A1P27658 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL8A1P27658 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL8A1P27658 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL8A1P27658 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL8A1P27658 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL8A1P27658 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
COL8A1P27658 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL8A1P27658 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL8A1P27658 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL8A1P27658 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL8A1P27658 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.54■□□□□ 0.24
COL8A1P27658 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL8A1P27658 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL8A1P27658 BX842568.4-201ENST00000421222 227 ntBASIC16.54■□□□□ 0.24
COL8A1P27658 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.54■□□□□ 0.24
COL8A1P27658 RNA5SP419-201ENST00000515908 135 ntBASIC16.54■□□□□ 0.24
COL8A1P27658 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC16.54■□□□□ 0.24
COL8A1P27658 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.54■□□□□ 0.24
COL8A1P27658 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.54■□□□□ 0.24
COL8A1P27658 TERC-201ENST00000602385 541 ntBASIC16.54■□□□□ 0.24
COL8A1P27658 AC099336.1-202ENST00000602961 463 ntBASIC16.54■□□□□ 0.24
COL8A1P27658 AL691403.2-201ENST00000618460 490 ntBASIC16.54■□□□□ 0.24
COL8A1P27658 PLK5-205ENST00000642079 1969 ntBASIC16.54■□□□□ 0.24
COL8A1P27658 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.54■□□□□ 0.24
COL8A1P27658 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.54■□□□□ 0.24
COL8A1P27658 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL8A1P27658 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL8A1P27658 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL8A1P27658 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.54■□□□□ 0.24
COL8A1P27658 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.54■□□□□ 0.24
COL8A1P27658 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC16.54■□□□□ 0.24
COL8A1P27658 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
COL8A1P27658 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.54■□□□□ 0.24
COL8A1P27658 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL8A1P27658 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL8A1P27658 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
COL8A1P27658 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.53■□□□□ 0.24
COL8A1P27658 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
COL8A1P27658 Z98882.1-201ENST00000622160 2253 ntBASIC16.53■□□□□ 0.24
COL8A1P27658 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
COL8A1P27658 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.53■□□□□ 0.24
COL8A1P27658 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
COL8A1P27658 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.53■□□□□ 0.24
COL8A1P27658 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
COL8A1P27658 MIR564-202ENST00000385049 94 ntBASIC16.53■□□□□ 0.24
COL8A1P27658 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.53■□□□□ 0.24
COL8A1P27658 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.53■□□□□ 0.24
COL8A1P27658 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.53■□□□□ 0.24
COL8A1P27658 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.53■□□□□ 0.24
COL8A1P27658 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 TP73-AS1-207ENST00000624167 988 ntBASIC16.53■□□□□ 0.24
COL8A1P27658 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.53■□□□□ 0.24
COL8A1P27658 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.53■□□□□ 0.24
COL8A1P27658 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
COL8A1P27658 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL8A1P27658 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.53■□□□□ 0.24
COL8A1P27658 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL8A1P27658 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC16.52■□□□□ 0.24
COL8A1P27658 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.52■□□□□ 0.24
COL8A1P27658 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL8A1P27658 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
COL8A1P27658 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC16.52■□□□□ 0.24
COL8A1P27658 PMS2P7-201ENST00000506558 1336 ntBASIC16.52■□□□□ 0.24
COL8A1P27658 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL8A1P27658 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
COL8A1P27658 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL8A1P27658 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.52■□□□□ 0.24
COL8A1P27658 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL8A1P27658 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.52■□□□□ 0.24
COL8A1P27658 AC005104.2-201ENST00000427818 678 ntBASIC16.52■□□□□ 0.24
COL8A1P27658 AC073648.2-201ENST00000510116 352 ntBASIC16.52■□□□□ 0.24
COL8A1P27658 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms