Protein–RNA interactions for Protein: Q9XRX5

HHLA3, HERV-H LTR-associating protein 3, humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HHLA3Q9XRX5 SCARNA24.1-201ENST00000516465 137 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 SUMO2P18-201ENST00000518873 252 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 RPL21P5-201ENST00000554662 472 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 AC109446.1-201ENST00000566172 220 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 MIR3136-201ENST00000583498 78 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 MIR4295-201ENST00000585286 85 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 RNU6-6P-201ENST00000606623 107 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 AL355802.3-201ENST00000607571 545 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 AC027807.2-201ENST00000616099 408 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 AC009159.2-201ENST00000617603 606 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 AC009878.1-201ENST00000621819 340 ntBASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.8□□□□□ -2.28
HHLA3Q9XRX5 AC010615.1-201ENST00000594254 1764 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 RNU6-862P-201ENST00000362804 105 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 RNU6-428P-201ENST00000362942 107 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 RNU6-179P-201ENST00000363350 107 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 Y_RNA.324-201ENST00000365165 102 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 Y_RNA.327-201ENST00000365201 102 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 SNORD115-7-201ENST00000365306 82 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 SNORA32.2-201ENST00000384049 122 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 RNU6-45P-201ENST00000384471 107 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 RNA5SP201-201ENST00000410316 124 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 MTCO2P8-201ENST00000412213 658 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AL590135.1-201ENST00000422215 156 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC019205.3-201ENST00000424573 156 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AL512286.1-201ENST00000439244 400 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC016700.2-201ENST00000446011 156 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC087343.1-201ENST00000477341 475 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 RAP1BP2-201ENST00000478270 544 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC015911.1-201ENST00000495111 156 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AL133373.1-201ENST00000497098 94 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC116562.3-201ENST00000506136 177 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AP001893.2-201ENST00000526949 202 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC068587.5-201ENST00000528506 175 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 ZNF321P-202ENST00000550843 495 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC015688.6-201ENST00000577737 104 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 SNORA59B-202ENST00000578183 701 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 snoU13.31-201ENST00000607291 104 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC136475.10-201ENST00000620253 385 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC007671.2-201ENST00000637344 619 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 AC006927.3-201ENST00000638789 384 ntBASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
HHLA3Q9XRX5 RNU6-1141P-201ENST00000364520 107 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 RNU6-1303P-201ENST00000364841 107 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 RNU6-336P-201ENST00000364891 107 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 RNU6-169P-201ENST00000365336 107 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 RNU6-438P-201ENST00000365561 103 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 MRPL35P1-201ENST00000404272 572 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 Y_RNA.595-201ENST00000410403 105 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 RNU6-1245P-201ENST00000411130 106 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 RNU6-387P-201ENST00000411331 105 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 CST2P1-201ENST00000425770 87 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 RNU6-377P-201ENST00000515965 102 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 RNU6-1098P-201ENST00000516772 96 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 AC090115.3-201ENST00000553218 849 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 MIR3937-201ENST00000580135 106 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 AC005771.1-201ENST00000585581 349 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 AL590229.1-201ENST00000603497 542 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 AC069114.2-201ENST00000604699 304 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 AC083806.3-201ENST00000614016 455 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 AC091895.1-201ENST00000624494 256 ntBASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
HHLA3Q9XRX5 ATP8A2P2-201ENST00000437678 1568 ntBASIC0.78□□□□□ -2.29
HHLA3Q9XRX5 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 AL159152.1-201ENST00000635019 2587 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 RNU6-500P-201ENST00000362349 107 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 SNORA63D-201ENST00000364359 132 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 RNU6-1187P-201ENST00000364771 110 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 SNORD32A-201ENST00000364805 84 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 RNU6-550P-201ENST00000391057 101 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 AC098592.1-201ENST00000419352 333 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 SNRPEP10-201ENST00000420249 274 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 AL356583.2-201ENST00000426536 280 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 MTND1P18-201ENST00000448191 573 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 EPS15P1-201ENST00000448836 336 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 GAPDHP17-201ENST00000449858 1001 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 ATP5J2P3-201ENST00000451550 258 ntBASIC0.77□□□□□ -2.29
HHLA3Q9XRX5 AC010531.2-201ENST00000465012 153 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms