Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC090897.2-201ENST00000581715 130 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 RNU2-4P-201ENST00000606190 192 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 SNORA62.6-201ENST00000606322 83 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.15-201ENST00000611544 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.16-201ENST00000613119 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.12-201ENST00000613778 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.9-201ENST00000615427 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.11-201ENST00000616345 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.2-201ENST00000616535 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.3-201ENST00000617785 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.19-201ENST00000618602 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 RNU2-1-201ENST00000618664 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.6-201ENST00000619225 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.5-201ENST00000619465 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 U2.10-201ENST00000620268 191 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.93□□□□□ -1.78
AP4E1Q9UPM8 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RNU6-312P-201ENST00000364629 107 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RNU6-487P-201ENST00000365430 104 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RNU6-793P-201ENST00000384233 104 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 MIR30B-201ENST00000384850 88 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 MIR549A-201ENST00000385268 96 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RNU6-1168P-201ENST00000390831 104 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RNU6-1154P-201ENST00000391001 104 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 HMGN2P8-201ENST00000391458 268 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RPL21P17-201ENST00000397467 475 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 SNORA3.3-201ENST00000408712 125 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RPS29P7-201ENST00000439662 171 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RPL39P29-201ENST00000447779 157 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 HMGN2P10-201ENST00000448085 265 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RPS27AP9-201ENST00000477681 438 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RPS29P20-201ENST00000489592 171 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 AC005840.1-201ENST00000498412 377 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RNU6-581P-201ENST00000516214 105 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RNA5SP143-201ENST00000516936 115 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 AP004242.1-201ENST00000533701 349 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 AC099654.7-201ENST00000635788 2127 ntBASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
AP4E1Q9UPM8 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 RNU6-600P-201ENST00000362524 99 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 Y_RNA.121-201ENST00000363309 113 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 Y_RNA.215-201ENST00000364204 112 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 RNU6-245P-201ENST00000384020 107 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 RNU6-417P-201ENST00000384712 107 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 AL512633.1-201ENST00000399931 655 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 RNU2-54P-201ENST00000410299 190 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 SEPT7P4-201ENST00000437076 306 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 SNRPGP5-201ENST00000456003 220 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 SNORD116-25-201ENST00000516517 92 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 RN7SKP209-201ENST00000516888 304 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 AC110741.2-201ENST00000605278 268 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 AC091895.1-201ENST00000624494 256 ntBASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.91□□□□□ -1.78
AP4E1Q9UPM8 Y_RNA.498-201ENST00000384460 102 ntBASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 AC019205.3-201ENST00000424573 156 ntBASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 AL591419.1-201ENST00000427423 339 ntBASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 RNU5F-8P-201ENST00000515941 111 ntBASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 RNU6-426P-201ENST00000516464 97 ntBASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 VN1R85P-201ENST00000601587 426 ntBASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 AL356575.1-201ENST00000603008 283 ntBASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 AC024220.1-201ENST00000603675 484 ntBASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
AP4E1Q9UPM8 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms