Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC115990.1-201ENST00000526957 301 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 KLKP1-201ENST00000595979 403 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 AC020914.4-201ENST00000597690 277 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 AC037487.3-201ENST00000606668 112 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 AC127459.3-201ENST00000624328 466 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 AC093908.1-201ENST00000623125 8092 ntBASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC87Q9NVE4 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 Y_RNA.200-201ENST00000364018 102 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 RNA5SP42-201ENST00000364278 115 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 RNU6-326P-201ENST00000365480 107 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 AL357075.1-201ENST00000404107 726 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 RPL39P29-201ENST00000447779 157 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 HSPE1P25-201ENST00000455484 251 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 RNA5SP309-201ENST00000516670 106 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 ACA59.2-201ENST00000517061 156 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 MIR5695-201ENST00000579717 85 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 MIR4423-201ENST00000580922 80 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 AC090897.2-201ENST00000581715 130 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 AL359198.2-201ENST00000611836 194 ntBASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC87Q9NVE4 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 Y_RNA.297-201ENST00000364950 91 ntBASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 RNU6-1145P-201ENST00000384246 107 ntBASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 RNU6-622P-201ENST00000384272 103 ntBASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 AL139156.1-201ENST00000412785 841 ntBASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 PRELID3BP1-201ENST00000457142 540 ntBASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 CYCSP23-201ENST00000519781 313 ntBASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 AC002543.1-201ENST00000299783 1954 ntBASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
CCDC87Q9NVE4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 RNA5SP361-201ENST00000362686 118 ntBASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 RNU6-1285P-201ENST00000363480 105 ntBASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 Y_RNA.230-201ENST00000364348 109 ntBASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 RNU6-102P-201ENST00000384485 104 ntBASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 MIR329-1-201ENST00000385028 80 ntBASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 RPS29P31-201ENST00000446147 164 ntBASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 AC073901.1-201ENST00000462471 408 ntBASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 SNORD19.2-201ENST00000516978 73 ntBASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 AC002076.2-201ENST00000617362 122 ntBASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 FTX_2.1-201ENST00000618816 94 ntBASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC87Q9NVE4 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 RNA5SP197-201ENST00000363357 119 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 Y_RNA.269-201ENST00000364685 89 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 RNU6-21P-201ENST00000384710 107 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 RN7SKP284-201ENST00000411002 343 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 AC012306.1-201ENST00000423267 114 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 AL161651.1-201ENST00000440882 223 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 AC117440.1-201ENST00000474107 571 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 RPL26P26-201ENST00000480251 434 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 MIR2114-201ENST00000516645 80 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 RNU2-31P-201ENST00000516954 155 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 AL360157.1-201ENST00000565962 87 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 HSPE1P7-201ENST00000604681 321 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 AC004792.1-201ENST00000614523 137 ntBASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC87Q9NVE4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
CCDC87Q9NVE4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.34□□□□□ -1.72
CCDC87Q9NVE4 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 RBBP8P1-201ENST00000449447 1844 ntBASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 MIR422A-201ENST00000362286 90 ntBASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 Y_RNA.180-201ENST00000363867 113 ntBASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 RNU6-301P-201ENST00000384277 107 ntBASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 AL031121.1-201ENST00000406553 254 ntBASIC4.33□□□□□ -1.72
CCDC87Q9NVE4 MIR1298-201ENST00000408783 112 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms