Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AL132822.1-201ENST00000617063 513 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 MIR6873-201ENST00000622788 63 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AC099654.12-201ENST00000639868 649 ntBASIC1.99□□□□□ -2.09
DDX28Q9NUL7 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
DDX28Q9NUL7 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 AC131280.1-202ENST00000624067 4211 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 Y_RNA.41-201ENST00000362646 102 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 RNU6-483P-201ENST00000384088 108 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 MIR514A2-201ENST00000385131 88 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 MIR514A3-201ENST00000385132 88 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 MIR676-201ENST00000390702 67 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 SNORA40.19-201ENST00000390846 128 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 RPL23AP95-201ENST00000426806 265 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 AL133396.1-201ENST00000432048 687 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 IFNA20P-201ENST00000436840 528 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 RPL23AP7-203ENST00000449021 469 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 AL137159.1-201ENST00000452808 512 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 RNU6-1037P-201ENST00000459571 107 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 RNU6-1208P-201ENST00000459588 107 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 MRPS17P9-201ENST00000511924 393 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 RNU6-1281P-201ENST00000516223 105 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 HSPE1P4-201ENST00000550617 308 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 AP001836.1-201ENST00000604675 523 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 AL034555.1-201ENST00000604816 211 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 AC092807.2-201ENST00000609367 243 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 SNORD98-201ENST00000636377 67 ntBASIC1.98□□□□□ -2.09
DDX28Q9NUL7 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
DDX28Q9NUL7 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
DDX28Q9NUL7 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.97□□□□□ -2.09
DDX28Q9NUL7 HMGN2P39-201ENST00000398005 273 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 RNU6-1068P-201ENST00000410958 103 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 AL021397.1-201ENST00000451806 248 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.97□□□□□ -2.09
DDX28Q9NUL7 AC025033.1-201ENST00000463883 194 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 AC107032.1-201ENST00000485945 480 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 RPL38P4-201ENST00000502376 214 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.97□□□□□ -2.09
DDX28Q9NUL7 DEFB122-202ENST00000569013 197 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 MIR4529-201ENST00000578110 78 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 MIR4287-201ENST00000579398 78 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 AC009831.4-201ENST00000620744 325 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 AC068137.3-201ENST00000639191 341 ntBASIC1.97□□□□□ -2.09
DDX28Q9NUL7 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
DDX28Q9NUL7 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AC092268.1-201ENST00000342691 405 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 RNU4-15P-201ENST00000362613 141 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 RNU4-56P-201ENST00000364700 142 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 Y_RNA.318-201ENST00000365131 97 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 SNORD73A-201ENST00000386062 65 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 RN7SKP223-201ENST00000410582 62 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AP000275.1-201ENST00000411943 390 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AL590135.1-201ENST00000422215 156 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AC019205.3-201ENST00000424573 156 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AC016700.2-201ENST00000446011 156 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AC015911.1-201ENST00000495111 156 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AC016632.1-201ENST00000503994 196 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 RNU6-314P-201ENST00000516574 104 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 Y_RNA.704-201ENST00000516851 102 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 RNU6-323P-201ENST00000521915 107 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 MIR1273D-201ENST00000577266 86 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 MIR5692C1-201ENST00000585309 91 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AC004492.1-201ENST00000607036 742 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AL357078.3-201ENST00000607528 618 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 DISC2.1-201ENST00000612827 205 ntBASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
DDX28Q9NUL7 AC121333.1-201ENST00000567488 2709 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 Y_RNA.231-201ENST00000364358 102 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 Y_RNA.372-201ENST00000365599 102 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 RNU6-780P-201ENST00000391030 104 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 EIF4E2P1-201ENST00000393781 255 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 AL512604.1-201ENST00000404812 257 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 AL590002.1-201ENST00000406554 418 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.95□□□□□ -2.1
DDX28Q9NUL7 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.95□□□□□ -2.1
DDX28Q9NUL7 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.95□□□□□ -2.1
DDX28Q9NUL7 RN7SL274P-201ENST00000492268 272 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 SNORA19.2-201ENST00000516013 114 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 RNU6-965P-201ENST00000516721 96 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.95□□□□□ -2.1
DDX28Q9NUL7 AP005597.4-201ENST00000526762 229 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms