Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 SNORA38.1-201ENST00000364172 131 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 RNA5SP387-201ENST00000364226 106 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 SNORA14A-201ENST00000364773 135 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 RNU6-806P-201ENST00000365147 105 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 RNY3P4-201ENST00000384428 101 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 MIR147B-201ENST00000390185 80 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 SNORD67-201ENST00000390833 111 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 RNU4-47P-201ENST00000410876 114 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 USP9YP16-201ENST00000430287 407 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 HMGN2P20-201ENST00000437531 273 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 USP9YP23-201ENST00000455085 407 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 RNU6-897P-201ENST00000517135 105 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 RNU6-711P-201ENST00000517255 106 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 AC021231.3-201ENST00000558497 370 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 AL078605.1-201ENST00000603529 500 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 AC007792.1-201ENST00000623023 402 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 MAPK10-322ENST00000641485 4530 ntBASIC3.42□□□□□ -1.86
PCIF1Q9H4Z3 SNORA70.4-201ENST00000365509 134 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 Y_RNA.396-201ENST00000383949 103 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 UBA52P6-201ENST00000399822 382 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 SNORA11.1-201ENST00000408133 129 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 RPL32P35-201ENST00000415214 394 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 SETP5-201ENST00000437270 562 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 AL136097.1-201ENST00000456945 913 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 AP001324.2-201ENST00000461163 319 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 MIR2355-201ENST00000517199 87 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 AC022868.1-201ENST00000517767 391 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 YPEL5P2-201ENST00000605553 359 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 AL121655.1-201ENST00000605811 308 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 RNU6-91P-201ENST00000607774 107 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 MIR8062-201ENST00000621515 85 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 MIR3651-201ENST00000630427 90 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 U6.98-201ENST00000637157 84 ntBASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PCIF1Q9H4Z3 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
PCIF1Q9H4Z3 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
PCIF1Q9H4Z3 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
PCIF1Q9H4Z3 Y_RNA.40-201ENST00000362645 93 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-1301P-201ENST00000362724 104 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 RNA5SP374-201ENST00000362939 125 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.222-201ENST00000364264 102 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.319-201ENST00000365138 92 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.458-201ENST00000384240 102 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-713P-201ENST00000384761 107 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 RNA5SP213-201ENST00000391031 106 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 RNU1-139P-201ENST00000391307 165 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 EI24P2-201ENST00000397776 1076 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 AL590135.1-201ENST00000422215 156 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 AC019205.3-201ENST00000424573 156 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 SDAD1P3-201ENST00000427380 333 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 AC016700.2-201ENST00000446011 156 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 AC090525.1-201ENST00000479116 478 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 GZMAP1-201ENST00000503054 631 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 AC067942.3-201ENST00000512025 362 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.668-201ENST00000516233 93 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 SNORA40.15-201ENST00000516884 107 ntBASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PCIF1Q9H4Z3 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-212P-201ENST00000362642 104 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.64-201ENST00000362845 102 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.105-201ENST00000363182 111 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.333-201ENST00000365274 102 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 SNORA7.4-201ENST00000384249 137 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-472P-201ENST00000384299 107 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 SNORD15B-201ENST00000384714 146 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 MIR767-201ENST00000390228 109 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 CYCSP48-201ENST00000417124 323 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AC138623.1-201ENST00000418060 216 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 EIF1P2-201ENST00000428233 350 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AL445305.1-201ENST00000432577 575 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 PCNPP5-201ENST00000452246 481 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AC006445.1-201ENST00000491925 405 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-1114P-201ENST00000516022 107 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms