Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 TRAV32-201ENST00000553993 340 ntBASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 MIR4765-201ENST00000585007 77 ntBASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 AC025253.1-201ENST00000613623 543 ntBASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 MIR6132-201ENST00000622083 109 ntBASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 AC007792.1-201ENST00000623023 402 ntBASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 MIR7157-201ENST00000635801 60 ntBASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 MIR7515-201ENST00000637837 67 ntBASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC28BQ9BUN5 MTND4P23-201ENST00000447723 1363 ntBASIC2.09□□□□□ -2.08
CCDC28BQ9BUN5 SNORD114-19-201ENST00000363072 75 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 RNU6-486P-201ENST00000363116 107 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 SNORD81.2-201ENST00000365153 76 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 RNU6-95P-201ENST00000384697 107 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 SNORA46.1-201ENST00000391069 153 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AP000275.1-201ENST00000411943 390 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 CYCSP48-201ENST00000417124 323 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 PDCL2P1-201ENST00000419302 352 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AC243964.1-201ENST00000441814 261 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 MTND1P17-201ENST00000448961 204 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AC108938.1-201ENST00000451204 136 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AL109933.2-201ENST00000452651 260 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 MTND1P11-201ENST00000456661 876 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 RPL36AP48-201ENST00000485521 314 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 CPDP1-201ENST00000579660 283 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AL033523.1-201ENST00000605153 153 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 uc_338.15-201ENST00000615470 191 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 CTSLP2-204ENST00000629029 392 ntBASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC28BQ9BUN5 SNORA16B-201ENST00000364674 135 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 RNA5SP160-201ENST00000364866 120 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 RNU6-1222P-201ENST00000384615 107 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 MIR128-1-201ENST00000384921 82 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 MIR548K-201ENST00000408406 116 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 RNU2-23P-201ENST00000410545 195 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AC097463.2-201ENST00000421074 142 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AC006946.1-201ENST00000429106 328 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 Z98742.2-201ENST00000431564 187 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 HMGB1P18-201ENST00000438801 619 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 USP9YP8-201ENST00000441913 500 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 snoU13.14-201ENST00000459372 104 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 RPL9P9-202ENST00000466501 579 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 RPL39P5-202ENST00000512505 151 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 RNA5SP356-201ENST00000515972 94 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 Y_RNA.691-201ENST00000516611 103 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AP005639.2-201ENST00000527592 928 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AC027176.1-201ENST00000560204 514 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 MIR4790-201ENST00000577799 79 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AL133215.3-201ENST00000609801 448 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AL162373.1-201ENST00000620433 407 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AL133216.2-202ENST00000634512 349 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 AC241585.2-209ENST00000638217 143 ntBASIC2.07□□□□□ -2.08
CCDC28BQ9BUN5 RNU6-1141P-201ENST00000364520 107 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 RNU6-593P-201ENST00000364716 112 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 RNU6-933P-201ENST00000384424 107 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 SNORA48.2-201ENST00000390926 124 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 RNU6-325P-201ENST00000411132 105 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 AC138623.1-201ENST00000418060 216 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 DAP3P1-201ENST00000441522 278 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 Y_RNA.682-201ENST00000516457 100 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 RNU6-875P-201ENST00000516488 106 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 SCARNA16.3-201ENST00000516595 184 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 RNU6-612P-201ENST00000516909 102 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 SNORA70.24-201ENST00000517233 118 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 AC115990.1-201ENST00000526957 301 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 CYCSP26-201ENST00000534107 320 ntBASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC28BQ9BUN5 AC008749.1-201ENST00000597650 306 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms