Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 RNU6-864P-201ENST00000516256 108 ntBASIC2.74□□□□□ -1.97
HERPUD2Q9BSE4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.74□□□□□ -1.97
HERPUD2Q9BSE4 NDUFA5P6-201ENST00000542110 379 ntBASIC2.74□□□□□ -1.97
HERPUD2Q9BSE4 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.74□□□□□ -1.97
HERPUD2Q9BSE4 CYP4A27P-201ENST00000567218 190 ntBASIC2.74□□□□□ -1.97
HERPUD2Q9BSE4 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.74□□□□□ -1.97
HERPUD2Q9BSE4 MTCO3P13-201ENST00000577757 781 ntBASIC2.74□□□□□ -1.97
HERPUD2Q9BSE4 MIR3942-201ENST00000585264 109 ntBASIC2.74□□□□□ -1.97
HERPUD2Q9BSE4 Z98751.3-201ENST00000604447 521 ntBASIC2.74□□□□□ -1.97
HERPUD2Q9BSE4 AL133215.3-201ENST00000609801 448 ntBASIC2.74□□□□□ -1.97
HERPUD2Q9BSE4 Y_RNA.151-201ENST00000363566 112 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 SNORA25.6-201ENST00000364121 118 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 RNU6-611P-201ENST00000384276 104 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 MIR9-1-201ENST00000385198 89 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 SNORA46.1-201ENST00000391069 153 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 RNU6-510P-201ENST00000391239 108 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 AC012306.1-201ENST00000423267 114 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 AL590632.1-201ENST00000424289 371 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 MTND1P2-201ENST00000430604 821 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 AC130509.1-201ENST00000464158 433 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 RPS27P27-201ENST00000498779 255 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 HMGB3P3-201ENST00000510526 400 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 RNA5SP282-201ENST00000516355 108 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 AC016256.1-201ENST00000547971 354 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 AL078605.1-201ENST00000603529 500 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 SNRPGP17-201ENST00000603780 214 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 MIR3976-201ENST00000606807 139 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 AC092794.2-201ENST00000620933 563 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 AL136221.1-201ENST00000621449 509 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 SNORA43.4-201ENST00000629559 138 ntBASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
HERPUD2Q9BSE4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 RNU6-743P-201ENST00000364151 106 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 SNORA36A-201ENST00000384221 132 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 RNU6-831P-201ENST00000384548 107 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 SNORA12-201ENST00000391162 147 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 MTCYBP2-201ENST00000407745 171 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 RNA5SP184-201ENST00000411071 108 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 AC063976.3-201ENST00000426849 329 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 IFNA11P-201ENST00000446352 526 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 AC132942.1-201ENST00000486753 483 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 AC069439.1-201ENST00000494739 167 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 RNU6-358P-201ENST00000516564 75 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 AC109446.1-201ENST00000566172 220 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 MIR548S-201ENST00000581352 82 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 AC073544.1-201ENST00000600110 1595 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 AC006023.1-201ENST00000603944 259 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 MIR6852-201ENST00000621699 66 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 FO624990.1-201ENST00000636373 85 ntBASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HERPUD2Q9BSE4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 Y_RNA.135-201ENST00000363439 95 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 U3.9-201ENST00000363823 204 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 MIR592-201ENST00000384959 97 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 MIR208B-201ENST00000401172 77 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 ARL5AP4-201ENST00000430731 512 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AC011816.1-201ENST00000441346 546 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 SNRPEP8-201ENST00000442866 260 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AL137159.1-201ENST00000452808 512 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 MTND1P11-201ENST00000456661 876 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AC021146.2-201ENST00000504736 556 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 MIR4319-201ENST00000577285 85 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 POLR3GP2-201ENST00000588366 668 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AC060780.3-201ENST00000589464 80 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AL031274.2-201ENST00000599419 203 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AP000654.2-201ENST00000605633 586 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AC019193.3-201ENST00000609144 554 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AL008636.1-201ENST00000625038 1018 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 AL450472.1-202ENST00000637286 180 ntBASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
HERPUD2Q9BSE4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
HERPUD2Q9BSE4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.7□□□□□ -1.98
HERPUD2Q9BSE4 RNU6-968P-201ENST00000384076 107 ntBASIC2.7□□□□□ -1.98
HERPUD2Q9BSE4 Y_RNA.500-201ENST00000384466 111 ntBASIC2.7□□□□□ -1.98
HERPUD2Q9BSE4 AL360182.1-201ENST00000397433 468 ntBASIC2.7□□□□□ -1.98
HERPUD2Q9BSE4 RNU6-1148P-201ENST00000410992 104 ntBASIC2.7□□□□□ -1.98
HERPUD2Q9BSE4 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.7□□□□□ -1.98
HERPUD2Q9BSE4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms