Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 RNA5SP72-201ENST00000364442 117 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 Y_RNA.243-201ENST00000364481 109 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 RNU6-1141P-201ENST00000364520 107 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 RNU1-73P-201ENST00000383971 164 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 SNORA72-201ENST00000384339 132 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 MIR549A-201ENST00000385268 96 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 RNU6-855P-201ENST00000410395 104 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 AL645608.4-201ENST00000423619 154 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 NDUFB4P6-201ENST00000436819 366 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 RPL21P10-201ENST00000463521 490 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 AC021231.3-201ENST00000558497 370 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 AC007012.1-201ENST00000567192 175 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 MIR6134-201ENST00000617606 109 ntBASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CNTNAP3BQ96NU0 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CNTNAP3BQ96NU0 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.72
CNTNAP3BQ96NU0 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.34□□□□□ -1.72
CNTNAP3BQ96NU0 FAM35BP-202ENST00000497389 3337 ntBASIC4.34□□□□□ -1.72
CNTNAP3BQ96NU0 AC063976.2-201ENST00000425667 3556 ntBASIC4.34□□□□□ -1.72
CNTNAP3BQ96NU0 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
CNTNAP3BQ96NU0 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 RNU6-778P-201ENST00000363269 103 ntBASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 MIR607-201ENST00000385241 96 ntBASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 AC012306.1-201ENST00000423267 114 ntBASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 AC078809.1-201ENST00000427601 140 ntBASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 AL356535.1-201ENST00000440335 398 ntBASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 AC010469.1-201ENST00000463864 576 ntBASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 IGKV1-22-201ENST00000524313 326 ntBASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CNTNAP3BQ96NU0 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 MIR494-201ENST00000349529 81 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 RNA5SP130-201ENST00000364431 114 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 Y_RNA.466-201ENST00000384294 113 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 MIR493-201ENST00000385254 89 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 SNORA26.3-201ENST00000391119 136 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 SNORA48.5-201ENST00000391143 135 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 SNORA79-201ENST00000408376 140 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 NDUFS5P4-201ENST00000412983 318 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 HMGB1P37-201ENST00000439613 609 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 RPL39P40-201ENST00000445481 146 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 RPS4XP2-201ENST00000458402 793 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 AC023141.12-201ENST00000512399 199 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 RNA5SP249-201ENST00000516127 99 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 RNA5SP281-201ENST00000516504 135 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 AC025647.1-201ENST00000517879 253 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 CR383656.8-201ENST00000549046 145 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 AL356575.1-201ENST00000603008 283 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 RNU6-94P-201ENST00000607728 107 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 MIR6715A-201ENST00000615929 79 ntBASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.32□□□□□ -1.72
CNTNAP3BQ96NU0 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 AC087190.4-201ENST00000574616 8334 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 AL133383.2-201ENST00000622958 2336 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 AC092268.1-201ENST00000342691 405 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 SNORD56.1-201ENST00000362913 68 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 Y_RNA.361-201ENST00000365515 120 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 SNORD18B-201ENST00000365659 72 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 RNU6-1014P-201ENST00000383940 103 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 RNU6-1124P-201ENST00000384169 107 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 Y_RNA.549-201ENST00000384657 102 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 AC125238.1-201ENST00000448842 249 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 SNRPGP7-201ENST00000469016 106 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 RN7SL585P-201ENST00000470538 280 ntBASIC4.31□□□□□ -1.72
CNTNAP3BQ96NU0 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms