Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 MIR6840-201ENST00000611937 71 ntBASIC2.49□□□□□ -2.01
SKA1Q96BD8 AL359314.1-201ENST00000616913 261 ntBASIC2.49□□□□□ -2.01
SKA1Q96BD8 AL136221.1-201ENST00000621449 509 ntBASIC2.49□□□□□ -2.01
SKA1Q96BD8 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SKA1Q96BD8 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SKA1Q96BD8 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.49□□□□□ -2.01
SKA1Q96BD8 U3.9-201ENST00000363823 204 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 RNU6-26P-201ENST00000383985 107 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 MIR17-201ENST00000385012 84 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 SNORA12-201ENST00000391162 147 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 MIR1262-201ENST00000408276 93 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 RNU6-908P-201ENST00000410160 94 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.48□□□□□ -2.01
SKA1Q96BD8 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SKA1Q96BD8 EIF1AXP1-201ENST00000419267 435 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.48□□□□□ -2.01
SKA1Q96BD8 UBE2V1P4-201ENST00000425374 344 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 AL353705.4-201ENST00000449661 238 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 RPL9P9-202ENST00000466501 579 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 RN7SL636P-201ENST00000497504 294 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 AC093259.1-201ENST00000509755 300 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 AC091874.1-201ENST00000511402 339 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 AC025465.4-201ENST00000513422 638 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 AK6P1-201ENST00000540219 478 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.48□□□□□ -2.01
SKA1Q96BD8 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.48□□□□□ -2.01
SKA1Q96BD8 CYP4A27P-201ENST00000567218 190 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.48□□□□□ -2.01
SKA1Q96BD8 MIR4287-201ENST00000579398 78 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.48□□□□□ -2.01
SKA1Q96BD8 Z98751.3-201ENST00000604447 521 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.48□□□□□ -2.01
SKA1Q96BD8 AC068944.2-201ENST00000610373 403 ntBASIC2.48□□□□□ -2.01
SKA1Q96BD8 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SKA1Q96BD8 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
SKA1Q96BD8 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.48□□□□□ -2.01
SKA1Q96BD8 AL596028.1-201ENST00000326971 197 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 Y_RNA.99-201ENST00000363138 105 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 XGY1-201ENST00000381172 446 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 RNA5SP465-201ENST00000391195 109 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 AL359511.1-201ENST00000402970 211 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.47□□□□□ -2.01
SKA1Q96BD8 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.47□□□□□ -2.01
SKA1Q96BD8 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.47□□□□□ -2.01
SKA1Q96BD8 snoU13.26-201ENST00000459452 105 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.47□□□□□ -2.01
SKA1Q96BD8 RPL39P5-202ENST00000512505 151 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 AC016256.1-201ENST00000547971 354 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.47□□□□□ -2.01
SKA1Q96BD8 ZNF519P2-201ENST00000557032 169 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 AC109446.1-201ENST00000566172 220 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.47□□□□□ -2.01
SKA1Q96BD8 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.47□□□□□ -2.01
SKA1Q96BD8 AC100830.2-201ENST00000581636 240 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 AF250324.2-201ENST00000608299 610 ntBASIC2.47□□□□□ -2.01
SKA1Q96BD8 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.46□□□□□ -2.01
SKA1Q96BD8 AC233981.2-201ENST00000611524 1614 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.46□□□□□ -2.02
SKA1Q96BD8 RNA5SP456-201ENST00000364002 114 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 RNU6-522P-201ENST00000364497 107 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 MIR504-201ENST00000385065 83 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
SKA1Q96BD8 MIR450B-201ENST00000401182 78 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 SNORA3.2-201ENST00000408221 125 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 RNA5SP201-201ENST00000410316 124 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 RNA5SP450-201ENST00000411206 102 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 Z98742.3-201ENST00000418637 326 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.46□□□□□ -2.02
SKA1Q96BD8 AC010095.1-201ENST00000443543 144 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 AC083904.1-201ENST00000487828 231 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 RNU1-41P-201ENST00000516161 162 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 RNU6-991P-201ENST00000516168 107 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 RNU1-48P-201ENST00000516400 162 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 AC109635.3-201ENST00000529536 185 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 SCOCP1-201ENST00000554676 349 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 PCGEM1.1-201ENST00000613431 131 ntBASIC2.46□□□□□ -2.02
SKA1Q96BD8 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
SKA1Q96BD8 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.45□□□□□ -2.02
SKA1Q96BD8 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
SKA1Q96BD8 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
SKA1Q96BD8 Y_RNA.167-201ENST00000363735 109 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 RNY3P3-201ENST00000363816 102 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 AL512604.1-201ENST00000404812 257 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 AC009963.1-201ENST00000417265 157 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.45□□□□□ -2.02
SKA1Q96BD8 DPH3P2-201ENST00000422618 250 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 MTCO1P20-201ENST00000425366 358 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.45□□□□□ -2.02
SKA1Q96BD8 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.45□□□□□ -2.02
SKA1Q96BD8 AC234781.5-201ENST00000508429 271 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.45□□□□□ -2.02
SKA1Q96BD8 RNU6-720P-201ENST00000516363 108 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 RNU6-1332P-201ENST00000516666 104 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 AC021269.2-201ENST00000532318 330 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 AC087241.2-201ENST00000535801 324 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 EIF1P4-201ENST00000572664 335 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.45□□□□□ -2.02
SKA1Q96BD8 BNIP3P25-201ENST00000596023 559 ntBASIC2.45□□□□□ -2.02
SKA1Q96BD8 AL078605.1-201ENST00000603529 500 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 155.3 ms