Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNU6-390P-201ENST00000516259 103 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AP003049.1-201ENST00000529418 457 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC018659.1-201ENST00000551083 169 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC137800.2-201ENST00000574375 120 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AL355598.1-201ENST00000604169 202 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC099654.9-201ENST00000637055 678 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 RNU6-1167P-201ENST00000363227 94 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 RNU6-216P-201ENST00000363282 104 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 RNU6-348P-201ENST00000384386 107 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 RNU6-278P-201ENST00000390945 109 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 TPMTP2-201ENST00000414372 726 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 MTCO2P25-201ENST00000447065 681 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 MIR4709-201ENST00000577272 72 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC133794.1-201ENST00000602731 914 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AP002906.1-201ENST00000603405 233 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AL162730.1-201ENST00000605734 292 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.11□□□□□ -2.39
CHD9Q3L8U1 AC104820.1-201ENST00000624183 307 ntBASIC0.11□□□□□ -2.39
CHD9Q3L8U1 Y_RNA.124-201ENST00000363339 93 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 Y_RNA.146-201ENST00000363549 102 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 RNU6-1210P-201ENST00000363775 107 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 SNORD56.4-201ENST00000363883 71 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 SNORA32.3-201ENST00000384772 121 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 UBE2V1P15-201ENST00000407776 448 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AL161935.2-201ENST00000414627 60 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 MTCO1P21-201ENST00000416634 589 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC011233.1-201ENST00000422812 283 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC007000.2-201ENST00000442564 487 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC074198.2-201ENST00000508153 258 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 SNORA31.2-201ENST00000516019 134 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC009902.1-201ENST00000519351 183 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC087897.1-201ENST00000550134 156 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC034229.4-201ENST00000607861 441 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC093648.1-201ENST00000623546 606 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 MIR1248-201ENST00000629190 106 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 SNORA25.3-201ENST00000363205 127 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 RNU6-839P-201ENST00000363347 108 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 RNU6-950P-201ENST00000384651 107 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 MIR140-201ENST00000385282 100 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 MIR1295A-201ENST00000408463 79 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 RNU4-27P-201ENST00000410889 139 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.1□□□□□ -2.39
CHD9Q3L8U1 OFD1P7Y-201ENST00000454643 1155 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 RPF2P2-201ENST00000504693 896 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 RNU6-143P-201ENST00000516942 93 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC093027.1-201ENST00000546698 429 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AL121579.1-201ENST00000555129 305 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC002400.1-201ENST00000569310 726 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC126365.2-201ENST00000580630 379 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC021171.1-201ENST00000603137 706 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC092354.1-201ENST00000606057 376 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AC040896.1-201ENST00000613819 479 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 AL357080.1-201ENST00000617394 239 ntBASIC0.1□□□□□ -2.39
CHD9Q3L8U1 RNU4-56P-201ENST00000364700 142 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 MTND1P31-201ENST00000449206 961 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 MTND2P6-201ENST00000455337 1030 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 snoU13.30-201ENST00000458951 104 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 RAP1BP2-201ENST00000478270 544 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 AC022493.2-201ENST00000506122 481 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 AL356057.1-201ENST00000533798 831 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 AL512310.8-201ENST00000550183 120 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 AC025678.1-201ENST00000567861 338 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 AC090615.1-201ENST00000577519 154 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 AC092106.3-201ENST00000611308 722 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 AC073349.3-201ENST00000617616 186 ntBASIC0.09□□□□□ -2.39
CHD9Q3L8U1 RNU6-1010P-201ENST00000362757 107 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 SNORD49B-201ENST00000365172 72 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 RNA5SP259-201ENST00000365541 109 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 SNORD12-201ENST00000391002 90 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 Y_RNA.597-201ENST00000410463 100 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 AC244023.1-201ENST00000426884 112 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 RAB28P5-201ENST00000427490 651 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC0.09□□□□□ -2.4
CHD9Q3L8U1 AC099677.2-201ENST00000436385 175 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 RNFT1P2-201ENST00000443064 757 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.09□□□□□ -2.4
CHD9Q3L8U1 TMEM251P1-201ENST00000503717 318 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 AP000763.2-201ENST00000540641 163 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.09□□□□□ -2.4
CHD9Q3L8U1 MIR3169-201ENST00000578032 83 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 AC242498.1-201ENST00000604134 111 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 AC104465.1-201ENST00000611365 139 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 AC243994.1-201ENST00000618627 109 ntBASIC0.09□□□□□ -2.4
CHD9Q3L8U1 MIR103A1-201ENST00000362165 78 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 Y_RNA.65-201ENST00000362846 100 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 SNORD114-31-201ENST00000363219 75 ntBASIC0.08□□□□□ -2.4
CHD9Q3L8U1 SNORD31B-201ENST00000364977 69 ntBASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms