Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC145146.1-201ENST00000496370 254 ntBASIC2.91□□□□□ -1.94
NEK3P51956 AC103851.1-201ENST00000506833 274 ntBASIC2.91□□□□□ -1.94
NEK3P51956 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.91□□□□□ -1.94
NEK3P51956 RN7SKP24-201ENST00000515888 284 ntBASIC2.91□□□□□ -1.94
NEK3P51956 RNA5SP367-201ENST00000516557 118 ntBASIC2.91□□□□□ -1.94
NEK3P51956 CBX3P7-201ENST00000532876 502 ntBASIC2.91□□□□□ -1.94
NEK3P51956 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.91□□□□□ -1.94
NEK3P51956 RPL17P51-201ENST00000605218 238 ntBASIC2.91□□□□□ -1.94
NEK3P51956 AC009318.2-201ENST00000610917 651 ntBASIC2.91□□□□□ -1.94
NEK3P51956 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
NEK3P51956 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.91□□□□□ -1.94
NEK3P51956 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.91□□□□□ -1.94
NEK3P51956 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
NEK3P51956 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.94
NEK3P51956 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.9□□□□□ -1.94
NEK3P51956 MTND4P12-201ENST00000498999 1377 ntBASIC2.9□□□□□ -1.94
NEK3P51956 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
NEK3P51956 SNORA5B-201ENST00000363786 132 ntBASIC2.9□□□□□ -1.95
NEK3P51956 RNU6-546P-201ENST00000383991 107 ntBASIC2.9□□□□□ -1.95
NEK3P51956 SNORA29-201ENST00000384183 140 ntBASIC2.9□□□□□ -1.95
NEK3P51956 RNU6-174P-201ENST00000410406 106 ntBASIC2.9□□□□□ -1.95
NEK3P51956 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.9□□□□□ -1.95
NEK3P51956 AC022616.8-201ENST00000533569 253 ntBASIC2.9□□□□□ -1.95
NEK3P51956 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.9□□□□□ -1.95
NEK3P51956 ELOCP29-201ENST00000588193 334 ntBASIC2.9□□□□□ -1.95
NEK3P51956 AC005858.4-201ENST00000623191 700 ntBASIC2.9□□□□□ -1.95
NEK3P51956 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
NEK3P51956 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.9□□□□□ -1.95
NEK3P51956 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
NEK3P51956 RNU6-1159P-201ENST00000362933 107 ntBASIC2.89□□□□□ -1.95
NEK3P51956 SNORD50.1-201ENST00000362987 71 ntBASIC2.89□□□□□ -1.95
NEK3P51956 U3.9-201ENST00000363823 204 ntBASIC2.89□□□□□ -1.95
NEK3P51956 Y_RNA.184-201ENST00000363884 108 ntBASIC2.89□□□□□ -1.95
NEK3P51956 SNORA46.1-201ENST00000391069 153 ntBASIC2.89□□□□□ -1.95
NEK3P51956 Y_RNA.597-201ENST00000410463 100 ntBASIC2.89□□□□□ -1.95
NEK3P51956 MTND5P20-201ENST00000448677 143 ntBASIC2.89□□□□□ -1.95
NEK3P51956 AC079354.2-201ENST00000453523 154 ntBASIC2.89□□□□□ -1.95
NEK3P51956 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.89□□□□□ -1.95
NEK3P51956 AC021146.2-201ENST00000504736 556 ntBASIC2.89□□□□□ -1.95
NEK3P51956 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.89□□□□□ -1.95
NEK3P51956 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.89□□□□□ -1.95
NEK3P51956 EIF4A1P12-201ENST00000551910 141 ntBASIC2.89□□□□□ -1.95
NEK3P51956 MIR4658-201ENST00000584344 65 ntBASIC2.89□□□□□ -1.95
NEK3P51956 AC018462.2-201ENST00000605375 395 ntBASIC2.89□□□□□ -1.95
NEK3P51956 PCGEM1.1-201ENST00000613431 131 ntBASIC2.89□□□□□ -1.95
NEK3P51956 MTND5P9-201ENST00000503854 1755 ntBASIC2.89□□□□□ -1.95
NEK3P51956 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
NEK3P51956 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
NEK3P51956 SNORD32B-201ENST00000364460 84 ntBASIC2.88□□□□□ -1.95
NEK3P51956 SNORA18.3-201ENST00000384122 132 ntBASIC2.88□□□□□ -1.95
NEK3P51956 Y_RNA.490-201ENST00000384413 102 ntBASIC2.88□□□□□ -1.95
NEK3P51956 Y_RNA.510-201ENST00000384511 114 ntBASIC2.88□□□□□ -1.95
NEK3P51956 RNU6-306P-201ENST00000384617 107 ntBASIC2.88□□□□□ -1.95
NEK3P51956 MIR512-1-201ENST00000384913 84 ntBASIC2.88□□□□□ -1.95
NEK3P51956 MIR1294-201ENST00000408503 142 ntBASIC2.88□□□□□ -1.95
NEK3P51956 RNA5SP494-201ENST00000410653 129 ntBASIC2.88□□□□□ -1.95
NEK3P51956 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.88□□□□□ -1.95
NEK3P51956 AC105272.1-201ENST00000438604 198 ntBASIC2.88□□□□□ -1.95
NEK3P51956 MRPL50P4-201ENST00000446432 475 ntBASIC2.88□□□□□ -1.95
NEK3P51956 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.88□□□□□ -1.95
NEK3P51956 Y_RNA.635-201ENST00000459041 101 ntBASIC2.88□□□□□ -1.95
NEK3P51956 SNORA59A-201ENST00000459326 152 ntBASIC2.88□□□□□ -1.95
NEK3P51956 AC005741.1-201ENST00000511094 432 ntBASIC2.88□□□□□ -1.95
NEK3P51956 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.88□□□□□ -1.95
NEK3P51956 AP000889.1-201ENST00000530968 660 ntBASIC2.88□□□□□ -1.95
NEK3P51956 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.88□□□□□ -1.95
NEK3P51956 GTF3AP2-201ENST00000557014 266 ntBASIC2.88□□□□□ -1.95
NEK3P51956 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.88□□□□□ -1.95
NEK3P51956 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.88□□□□□ -1.95
NEK3P51956 MIR5696-201ENST00000578474 85 ntBASIC2.88□□□□□ -1.95
NEK3P51956 MIR4273-201ENST00000582824 84 ntBASIC2.88□□□□□ -1.95
NEK3P51956 AC243960.4-201ENST00000600532 288 ntBASIC2.88□□□□□ -1.95
NEK3P51956 7SK.7-201ENST00000603504 247 ntBASIC2.88□□□□□ -1.95
NEK3P51956 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.88□□□□□ -1.95
NEK3P51956 SCARNA4-201ENST00000629045 128 ntBASIC2.88□□□□□ -1.95
NEK3P51956 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.88□□□□□ -1.95
NEK3P51956 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.87□□□□□ -1.95
NEK3P51956 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.87□□□□□ -1.95
NEK3P51956 RNU1-23P-201ENST00000363361 144 ntBASIC2.87□□□□□ -1.95
NEK3P51956 Y_RNA.142-201ENST00000363491 102 ntBASIC2.87□□□□□ -1.95
NEK3P51956 RNU4-9P-201ENST00000364951 139 ntBASIC2.87□□□□□ -1.95
NEK3P51956 Y_RNA.303-201ENST00000364998 94 ntBASIC2.87□□□□□ -1.95
NEK3P51956 SNORA25B-201ENST00000365507 128 ntBASIC2.87□□□□□ -1.95
NEK3P51956 RNU6-601P-201ENST00000384540 107 ntBASIC2.87□□□□□ -1.95
NEK3P51956 AL356432.1-201ENST00000405809 419 ntBASIC2.87□□□□□ -1.95
NEK3P51956 RNU2-32P-201ENST00000411193 191 ntBASIC2.87□□□□□ -1.95
NEK3P51956 Z82205.1-201ENST00000428456 297 ntBASIC2.87□□□□□ -1.95
NEK3P51956 ARL5AP4-201ENST00000430731 512 ntBASIC2.87□□□□□ -1.95
NEK3P51956 AC087499.2-201ENST00000432861 149 ntBASIC2.87□□□□□ -1.95
NEK3P51956 FTH1P25-201ENST00000447665 469 ntBASIC2.87□□□□□ -1.95
NEK3P51956 AL353705.4-201ENST00000449661 238 ntBASIC2.87□□□□□ -1.95
NEK3P51956 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.87□□□□□ -1.95
NEK3P51956 RPS27AP9-201ENST00000477681 438 ntBASIC2.87□□□□□ -1.95
NEK3P51956 Y_RNA.702-201ENST00000516843 96 ntBASIC2.87□□□□□ -1.95
NEK3P51956 Y_RNA.708-201ENST00000516950 96 ntBASIC2.87□□□□□ -1.95
NEK3P51956 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
NEK3P51956 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.87□□□□□ -1.95
NEK3P51956 AC009994.1-201ENST00000606889 253 ntBASIC2.87□□□□□ -1.95
NEK3P51956 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
NEK3P51956 AC092794.2-201ENST00000620933 563 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms