Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC009233.1-201ENST00000616477 371 ntBASIC1.72□□□□□ -2.13
HOXA9P31269 AC026585.1-201ENST00000619582 524 ntBASIC1.72□□□□□ -2.13
HOXA9P31269 MIR5739-201ENST00000619803 80 ntBASIC1.72□□□□□ -2.13
HOXA9P31269 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.72□□□□□ -2.13
HOXA9P31269 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.72□□□□□ -2.13
HOXA9P31269 AC022418.1-201ENST00000624118 445 ntBASIC1.72□□□□□ -2.13
HOXA9P31269 SCARNA4-202ENST00000625402 129 ntBASIC1.72□□□□□ -2.13
HOXA9P31269 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.72□□□□□ -2.13
HOXA9P31269 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HOXA9P31269 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.72□□□□□ -2.13
HOXA9P31269 AC006026.1-201ENST00000444025 1803 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-37P-201ENST00000362692 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-78P-201ENST00000362897 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-529P-201ENST00000363383 104 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-11P-201ENST00000364234 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 U3.13-201ENST00000364804 214 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-234P-201ENST00000365229 104 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-25P-201ENST00000383873 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-1-201ENST00000383898 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 Y_RNA.399-201ENST00000383955 105 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-48P-201ENST00000384161 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-36P-201ENST00000384172 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-4P-201ENST00000384205 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-5P-201ENST00000384238 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-3P-201ENST00000384314 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-434P-201ENST00000384376 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-16P-201ENST00000384385 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-15P-201ENST00000384534 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-2-201ENST00000384627 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-29P-201ENST00000384637 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-9-201ENST00000384776 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-33P-201ENST00000384793 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 SNORA40.19-201ENST00000390846 128 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-780P-201ENST00000391030 104 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 MTCO3P40-201ENST00000392516 676 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RAP1BP3-201ENST00000407180 549 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 HMGB1P31-201ENST00000437242 427 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.71□□□□□ -2.14
HOXA9P31269 AL441985.1-201ENST00000457727 251 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 CYP2C59P-201ENST00000457790 269 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AC018437.1-201ENST00000492214 406 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AC107953.1-201ENST00000522216 297 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AC136619.2-201ENST00000563361 631 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AL031274.2-201ENST00000599419 203 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AL136363.2-201ENST00000604173 851 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AL670379.2-201ENST00000604983 252 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AC021646.1-201ENST00000605469 484 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AC123912.5-201ENST00000605470 343 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 RNU6-6P-201ENST00000606623 107 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AC002044.1-201ENST00000606707 158 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AC092954.2-201ENST00000609103 430 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 AC093788.1-201ENST00000609356 927 ntBASIC1.71□□□□□ -2.14
HOXA9P31269 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
HOXA9P31269 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
HOXA9P31269 AC138393.1-203ENST00000327086 343 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AC244636.1-201ENST00000421152 228 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.7□□□□□ -2.14
HOXA9P31269 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.7□□□□□ -2.14
HOXA9P31269 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.7□□□□□ -2.14
HOXA9P31269 RNU6-261P-201ENST00000459506 102 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AC087884.1-201ENST00000469738 328 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AC083798.1-201ENST00000472671 131 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AC005840.1-201ENST00000498412 377 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AC019235.1-201ENST00000503847 207 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AC009646.1-201ENST00000510455 318 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.7□□□□□ -2.14
HOXA9P31269 TRMT112P2-201ENST00000512910 132 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 RNU6-835P-201ENST00000516974 104 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AP001893.2-201ENST00000526949 202 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AC022880.1-201ENST00000534017 973 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.7□□□□□ -2.14
HOXA9P31269 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.7□□□□□ -2.14
HOXA9P31269 AC090897.2-201ENST00000581715 130 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.7□□□□□ -2.14
HOXA9P31269 HULC.1-201ENST00000612720 240 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 AL359880.1-201ENST00000621879 266 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 MIR3529-201ENST00000637713 78 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 MTND4P23-201ENST00000447723 1363 ntBASIC1.7□□□□□ -2.14
HOXA9P31269 Y_RNA.40-201ENST00000362645 93 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 SNORD56.1-201ENST00000362913 68 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 RNU6-60P-201ENST00000364792 103 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 RNU6-487P-201ENST00000365430 104 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 SNORA69-201ENST00000383895 132 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 SNORD116-4-201ENST00000384733 96 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 BX510359.4-201ENST00000423750 193 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 AC008267.5-201ENST00000424928 265 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 MTCO2P7-201ENST00000446518 666 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 SRRM1P2-201ENST00000464531 1192 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.69□□□□□ -2.14
HOXA9P31269 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.69□□□□□ -2.14
HOXA9P31269 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.69□□□□□ -2.14
HOXA9P31269 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.69□□□□□ -2.14
HOXA9P31269 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.69□□□□□ -2.14
HOXA9P31269 AC004223.2-201ENST00000590309 544 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 AF250324.2-201ENST00000608299 610 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 U4.7-201ENST00000638126 106 ntBASIC1.69□□□□□ -2.14
HOXA9P31269 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.69□□□□□ -2.14
HOXA9P31269 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
HOXA9P31269 HAUS6P2-201ENST00000433254 2404 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms