Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.72□□□□□ -2.29
HLA-DMBP28068 ZNF519P3-201ENST00000557158 1032 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC0.72□□□□□ -2.29
HLA-DMBP28068 FAM106DP-201ENST00000586416 501 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 AC008521.1-201ENST00000587471 187 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 NIFKP6-201ENST00000598115 845 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 AL590229.1-201ENST00000603497 542 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 RNU6-87P-201ENST00000607561 108 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 AC107308.1-201ENST00000615897 301 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 Z69720.2-201ENST00000624755 279 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 AL157786.1-207ENST00000627771 695 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 AC099654.5-201ENST00000636479 350 ntBASIC0.72□□□□□ -2.29
HLA-DMBP28068 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.71□□□□□ -2.3
HLA-DMBP28068 RNU6-862P-201ENST00000362804 105 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 RNU1-93P-201ENST00000364704 169 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 RNU6-968P-201ENST00000384076 107 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 RNA5SP201-201ENST00000410316 124 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 RNU6-607P-201ENST00000411283 108 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 ARL5AP1-201ENST00000418991 388 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
HLA-DMBP28068 SNX2P2-201ENST00000424553 323 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 CALM2P2-201ENST00000428512 440 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC243964.1-201ENST00000441814 261 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.71□□□□□ -2.3
HLA-DMBP28068 ARL2BPP4-201ENST00000506854 471 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC034244.1-201ENST00000507687 207 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.71□□□□□ -2.3
HLA-DMBP28068 MTCO3P28-201ENST00000513351 515 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 RNA5SP220-201ENST00000516298 104 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 RN7SKP265-201ENST00000516448 223 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.71□□□□□ -2.3
HLA-DMBP28068 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.71□□□□□ -2.3
HLA-DMBP28068 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC011604.1-201ENST00000545978 196 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC087883.1-201ENST00000551882 391 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC136932.1-201ENST00000574771 208 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 MIR5692A1-201ENST00000580523 69 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC004492.1-201ENST00000607036 742 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC083806.3-201ENST00000614016 455 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC012676.2-201ENST00000619258 186 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 MIR6734-201ENST00000621166 68 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC097372.5-201ENST00000623665 376 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 AC004808.1-201ENST00000627671 721 ntBASIC0.71□□□□□ -2.3
HLA-DMBP28068 SNORD31B-201ENST00000364977 69 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 RNU6-438P-201ENST00000365561 103 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 RNU6-157P-201ENST00000383957 107 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 RNU6-39P-201ENST00000384344 107 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 Y_RNA.508-201ENST00000384502 114 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 MIR520E-201ENST00000384867 87 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 AL117342.1-201ENST00000404861 406 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 AC137499.1-201ENST00000427602 88 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 MED13P1-201ENST00000428342 171 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 RPL37P21-201ENST00000435890 276 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 RPL22P17-201ENST00000438729 315 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.7□□□□□ -2.3
HLA-DMBP28068 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC0.7□□□□□ -2.3
HLA-DMBP28068 AC016925.1-201ENST00000458303 298 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 RPS29P1-201ENST00000465274 159 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 RPL39P28-201ENST00000465655 155 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC0.7□□□□□ -2.3
HLA-DMBP28068 UBL5P1-201ENST00000507979 193 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 SNORA31.16-201ENST00000516773 139 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 RNU6-685P-201ENST00000517088 95 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.7□□□□□ -2.3
HLA-DMBP28068 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.7□□□□□ -2.3
HLA-DMBP28068 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC0.7□□□□□ -2.3
HLA-DMBP28068 AC073539.2-201ENST00000597113 165 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 AC110760.3-201ENST00000598794 467 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 AC012507.3-201ENST00000603556 477 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 MIR3976-201ENST00000606807 139 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 AL365434.2-201ENST00000607979 234 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 AL159152.1-201ENST00000635019 2587 ntBASIC0.7□□□□□ -2.3
HLA-DMBP28068 Y_RNA.118-201ENST00000363300 101 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-1141P-201ENST00000364520 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 Y_RNA.355-201ENST00000365462 98 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-61P-201ENST00000365528 109 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-1-201ENST00000383898 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-42P-201ENST00000384165 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-36P-201ENST00000384172 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-4P-201ENST00000384205 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-5P-201ENST00000384238 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-3P-201ENST00000384314 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 SNORA25-201ENST00000384384 134 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-2-201ENST00000384627 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-9-201ENST00000384776 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-33P-201ENST00000384793 107 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 MIR558-201ENST00000384920 94 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
HLA-DMBP28068 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-1242P-201ENST00000391052 103 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
HLA-DMBP28068 RNU6-1245P-201ENST00000411130 106 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.69□□□□□ -2.3
HLA-DMBP28068 CYCSP33-201ENST00000414485 327 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 MTCO2P21-201ENST00000419780 677 ntBASIC0.69□□□□□ -2.3
HLA-DMBP28068 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms