Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC3.05□□□□□ -1.92
HMGB1P09429 AC093783.1-201ENST00000612976 329 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 AL136221.1-201ENST00000621449 509 ntBASIC3.05□□□□□ -1.92
HMGB1P09429 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.05□□□□□ -1.92
HMGB1P09429 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HMGB1P09429 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HMGB1P09429 RNA5SP501-201ENST00000410990 112 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 MTCO1P20-201ENST00000425366 358 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 UBE2V1P4-201ENST00000425374 344 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.04□□□□□ -1.92
HMGB1P09429 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.04□□□□□ -1.92
HMGB1P09429 ATP5EP1-201ENST00000510257 156 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 RNU6-1098P-201ENST00000516772 96 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 MIR514B-201ENST00000516774 80 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 AC064807.4-201ENST00000607201 407 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 MIR7106-201ENST00000612419 65 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 AC087241.4-201ENST00000612441 480 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 MIR1321-201ENST00000637766 79 ntBASIC3.04□□□□□ -1.92
HMGB1P09429 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
HMGB1P09429 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HMGB1P09429 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
HMGB1P09429 SNORD62.1-201ENST00000362541 86 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 SNORA80A-201ENST00000363922 136 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 RNA5SP493-201ENST00000364115 91 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 RNU1-51P-201ENST00000365345 176 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 AC244636.1-201ENST00000421152 228 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 AL589823.1-201ENST00000429577 183 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.03□□□□□ -1.92
HMGB1P09429 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.03□□□□□ -1.92
HMGB1P09429 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.03□□□□□ -1.92
HMGB1P09429 EIF4BP1-201ENST00000554881 351 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 ZNF519P2-201ENST00000557032 169 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 ANP32BP3-201ENST00000559213 706 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.03□□□□□ -1.92
HMGB1P09429 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.03□□□□□ -1.92
HMGB1P09429 AL033523.1-201ENST00000605153 153 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.03□□□□□ -1.92
HMGB1P09429 FAM157A-202ENST00000615155 405 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 U1.36-201ENST00000620684 176 ntBASIC3.03□□□□□ -1.92
HMGB1P09429 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
HMGB1P09429 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
HMGB1P09429 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HMGB1P09429 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HMGB1P09429 SNORD114-6-201ENST00000364393 72 ntBASIC3.02□□□□□ -1.93
HMGB1P09429 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HMGB1P09429 RNU6-1026P-201ENST00000384465 108 ntBASIC3.02□□□□□ -1.93
HMGB1P09429 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
HMGB1P09429 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
HMGB1P09429 AL356432.1-201ENST00000405809 419 ntBASIC3.02□□□□□ -1.93
HMGB1P09429 AL030996.1-201ENST00000411430 235 ntBASIC3.02□□□□□ -1.93
HMGB1P09429 RPS12P2-201ENST00000439728 269 ntBASIC3.02□□□□□ -1.93
HMGB1P09429 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.02□□□□□ -1.93
HMGB1P09429 MTCO1P29-201ENST00000496868 288 ntBASIC3.02□□□□□ -1.93
HMGB1P09429 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.02□□□□□ -1.93
HMGB1P09429 MRPS17P9-201ENST00000511924 393 ntBASIC3.02□□□□□ -1.93
HMGB1P09429 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.02□□□□□ -1.93
HMGB1P09429 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.02□□□□□ -1.93
HMGB1P09429 HMSD-204ENST00000526932 162 ntTSL 3 BASIC3.02□□□□□ -1.93
HMGB1P09429 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.02□□□□□ -1.93
HMGB1P09429 AC146944.4-201ENST00000602697 718 ntBASIC3.02□□□□□ -1.93
HMGB1P09429 AC092608.2-201ENST00000624427 218 ntBASIC3.02□□□□□ -1.93
HMGB1P09429 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.02□□□□□ -1.93
HMGB1P09429 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC3.02□□□□□ -1.93
HMGB1P09429 LINC02555-201ENST00000563933 1951 ntBASIC3.01□□□□□ -1.93
HMGB1P09429 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HMGB1P09429 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.01□□□□□ -1.93
HMGB1P09429 Y_RNA.332-201ENST00000365271 113 ntBASIC3.01□□□□□ -1.93
HMGB1P09429 SNORA8-201ENST00000384574 139 ntBASIC3.01□□□□□ -1.93
HMGB1P09429 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
HMGB1P09429 Z92545.1-201ENST00000411782 234 ntBASIC3.01□□□□□ -1.93
HMGB1P09429 AC123900.1-201ENST00000420390 96 ntBASIC3.01□□□□□ -1.93
HMGB1P09429 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.01□□□□□ -1.93
HMGB1P09429 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.01□□□□□ -1.93
HMGB1P09429 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.01□□□□□ -1.93
HMGB1P09429 Y_RNA.665-201ENST00000516177 98 ntBASIC3.01□□□□□ -1.93
HMGB1P09429 MTND1P35-201ENST00000526739 508 ntBASIC3.01□□□□□ -1.93
HMGB1P09429 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.01□□□□□ -1.93
HMGB1P09429 AC006386.2-201ENST00000624491 75 ntBASIC3.01□□□□□ -1.93
HMGB1P09429 AC012005.1-201ENST00000624575 75 ntBASIC3.01□□□□□ -1.93
HMGB1P09429 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
HMGB1P09429 RNU6-254P-201ENST00000363377 107 ntBASIC3□□□□□ -1.93
HMGB1P09429 RNY3P3-201ENST00000363816 102 ntBASIC3□□□□□ -1.93
HMGB1P09429 RNA5SP456-201ENST00000364002 114 ntBASIC3□□□□□ -1.93
HMGB1P09429 SNORA32.2-201ENST00000384049 122 ntBASIC3□□□□□ -1.93
HMGB1P09429 SNORA29-201ENST00000384183 140 ntBASIC3□□□□□ -1.93
HMGB1P09429 MIR27B-201ENST00000385129 97 ntBASIC3□□□□□ -1.93
HMGB1P09429 RNA5SP212-201ENST00000391223 107 ntBASIC3□□□□□ -1.93
HMGB1P09429 RNA5SP494-201ENST00000410653 129 ntBASIC3□□□□□ -1.93
HMGB1P09429 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3□□□□□ -1.93
HMGB1P09429 AC025750.2-201ENST00000442609 450 ntBASIC3□□□□□ -1.93
HMGB1P09429 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC3□□□□□ -1.93
HMGB1P09429 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3□□□□□ -1.93
HMGB1P09429 AC100830.2-201ENST00000581636 240 ntBASIC3□□□□□ -1.93
HMGB1P09429 CTHRC1P1-201ENST00000605383 469 ntBASIC3□□□□□ -1.93
HMGB1P09429 AC009994.1-201ENST00000606889 253 ntBASIC3□□□□□ -1.93
HMGB1P09429 AC005520.5-201ENST00000613926 164 ntBASIC3□□□□□ -1.93
HMGB1P09429 AC005296.1-201ENST00000616145 209 ntBASIC3□□□□□ -1.93
HMGB1P09429 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms