Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC016632.1-201ENST00000503994 196 ntBASIC2.12□□□□□ -2.07
VIMP08670 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.12□□□□□ -2.07
VIMP08670 RNU6-720P-201ENST00000516363 108 ntBASIC2.12□□□□□ -2.07
VIMP08670 RNU6-612P-201ENST00000516909 102 ntBASIC2.12□□□□□ -2.07
VIMP08670 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.12□□□□□ -2.07
VIMP08670 AC016957.1-201ENST00000534895 309 ntBASIC2.12□□□□□ -2.07
VIMP08670 AP002770.2-201ENST00000543613 532 ntBASIC2.12□□□□□ -2.07
VIMP08670 AL157687.1-201ENST00000554853 619 ntBASIC2.12□□□□□ -2.07
VIMP08670 BNIP3P25-201ENST00000596023 559 ntBASIC2.12□□□□□ -2.07
VIMP08670 AL078605.1-201ENST00000603529 500 ntBASIC2.12□□□□□ -2.07
VIMP08670 AC012493.3-201ENST00000604494 112 ntBASIC2.12□□□□□ -2.07
VIMP08670 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.12□□□□□ -2.07
VIMP08670 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.12□□□□□ -2.07
VIMP08670 DUXAP9-208ENST00000622815 614 ntBASIC2.12□□□□□ -2.07
VIMP08670 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.12□□□□□ -2.07
VIMP08670 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.11□□□□□ -2.07
VIMP08670 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.11□□□□□ -2.07
VIMP08670 MTND4P23-201ENST00000447723 1363 ntBASIC2.11□□□□□ -2.07
VIMP08670 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
VIMP08670 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
VIMP08670 AC092268.1-201ENST00000342691 405 ntBASIC2.11□□□□□ -2.07
VIMP08670 Y_RNA.3-201ENST00000362331 103 ntBASIC2.11□□□□□ -2.07
VIMP08670 SNORD32B-201ENST00000364460 84 ntBASIC2.11□□□□□ -2.07
VIMP08670 RNU4-56P-201ENST00000364700 142 ntBASIC2.11□□□□□ -2.07
VIMP08670 SNORA36A-201ENST00000384221 132 ntBASIC2.11□□□□□ -2.07
VIMP08670 MIR518A2-201ENST00000384966 87 ntBASIC2.11□□□□□ -2.07
VIMP08670 SNORA26.3-201ENST00000391119 136 ntBASIC2.11□□□□□ -2.07
VIMP08670 BTF3L4P2-201ENST00000392798 346 ntBASIC2.11□□□□□ -2.07
VIMP08670 SUMO2P12-201ENST00000405924 140 ntBASIC2.11□□□□□ -2.07
VIMP08670 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.11□□□□□ -2.07
VIMP08670 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.11□□□□□ -2.07
VIMP08670 MTCO1P20-201ENST00000425366 358 ntBASIC2.11□□□□□ -2.07
VIMP08670 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.11□□□□□ -2.07
VIMP08670 MRPS10P2-201ENST00000431226 381 ntBASIC2.11□□□□□ -2.07
VIMP08670 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.11□□□□□ -2.07
VIMP08670 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.11□□□□□ -2.07
VIMP08670 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.11□□□□□ -2.07
VIMP08670 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.11□□□□□ -2.07
VIMP08670 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.11□□□□□ -2.07
VIMP08670 AC008628.2-201ENST00000502605 298 ntBASIC2.11□□□□□ -2.07
VIMP08670 MIR449C-201ENST00000516047 92 ntBASIC2.11□□□□□ -2.07
VIMP08670 EIF1P4-201ENST00000572664 335 ntBASIC2.11□□□□□ -2.07
VIMP08670 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.11□□□□□ -2.07
VIMP08670 AC078899.2-201ENST00000595282 212 ntBASIC2.11□□□□□ -2.07
VIMP08670 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.11□□□□□ -2.07
VIMP08670 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.11□□□□□ -2.07
VIMP08670 SNORA43.4-201ENST00000629559 138 ntBASIC2.11□□□□□ -2.07
VIMP08670 AL450472.1-202ENST00000637286 180 ntBASIC2.11□□□□□ -2.07
VIMP08670 MIR208A-201ENST00000362287 71 ntBASIC2.1□□□□□ -2.07
VIMP08670 RNU6-451P-201ENST00000362921 107 ntBASIC2.1□□□□□ -2.07
VIMP08670 RNY3P3-201ENST00000363816 102 ntBASIC2.1□□□□□ -2.07
VIMP08670 RNA5SP387-201ENST00000364226 106 ntBASIC2.1□□□□□ -2.07
VIMP08670 SNORA70.4-201ENST00000365509 134 ntBASIC2.1□□□□□ -2.07
VIMP08670 MIR181A1-201ENST00000385026 110 ntBASIC2.1□□□□□ -2.07
VIMP08670 MIR1294-201ENST00000408503 142 ntBASIC2.1□□□□□ -2.07
VIMP08670 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.1□□□□□ -2.07
VIMP08670 Y_RNA.615-201ENST00000410769 117 ntBASIC2.1□□□□□ -2.07
VIMP08670 HMGN2P19-201ENST00000425149 265 ntBASIC2.1□□□□□ -2.07
VIMP08670 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.1□□□□□ -2.07
VIMP08670 HMGB3P17-201ENST00000504195 649 ntBASIC2.1□□□□□ -2.07
VIMP08670 ANXA2P1-201ENST00000505539 926 ntBASIC2.1□□□□□ -2.07
VIMP08670 AC092436.3-201ENST00000511788 257 ntBASIC2.1□□□□□ -2.07
VIMP08670 MRPS17P9-201ENST00000511924 393 ntBASIC2.1□□□□□ -2.07
VIMP08670 PTP4A1P4-201ENST00000512479 322 ntBASIC2.1□□□□□ -2.07
VIMP08670 RNU6-1332P-201ENST00000516666 104 ntBASIC2.1□□□□□ -2.07
VIMP08670 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.1□□□□□ -2.07
VIMP08670 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.1□□□□□ -2.07
VIMP08670 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
VIMP08670 FAM157A-202ENST00000615155 405 ntBASIC2.1□□□□□ -2.07
VIMP08670 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.1□□□□□ -2.07
VIMP08670 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
VIMP08670 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.07
VIMP08670 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
VIMP08670 RNU6-1317P-201ENST00000364582 104 ntBASIC2.09□□□□□ -2.07
VIMP08670 Y_RNA.373-201ENST00000365600 103 ntBASIC2.09□□□□□ -2.07
VIMP08670 Y_RNA.554-201ENST00000384672 102 ntBASIC2.09□□□□□ -2.07
VIMP08670 MIR450B-201ENST00000401182 78 ntBASIC2.09□□□□□ -2.07
VIMP08670 MTCYBP2-201ENST00000407745 171 ntBASIC2.09□□□□□ -2.07
VIMP08670 RNU4-26P-201ENST00000410270 107 ntBASIC2.09□□□□□ -2.07
VIMP08670 RNA5SP201-201ENST00000410316 124 ntBASIC2.09□□□□□ -2.07
VIMP08670 C8orf59P1-201ENST00000429930 303 ntBASIC2.09□□□□□ -2.07
VIMP08670 AL109933.2-201ENST00000452651 260 ntBASIC2.09□□□□□ -2.07
VIMP08670 AMD1P1-201ENST00000457220 922 ntBASIC2.09□□□□□ -2.07
VIMP08670 RPS29P27-201ENST00000463711 170 ntBASIC2.09□□□□□ -2.07
VIMP08670 RPL9P9-202ENST00000466501 579 ntBASIC2.09□□□□□ -2.07
VIMP08670 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.09□□□□□ -2.07
VIMP08670 AC025465.4-201ENST00000513422 638 ntBASIC2.09□□□□□ -2.07
VIMP08670 Y_RNA.665-201ENST00000516177 98 ntBASIC2.09□□□□□ -2.07
VIMP08670 RNA5SP200-201ENST00000516360 103 ntBASIC2.09□□□□□ -2.07
VIMP08670 RNA5SP148-201ENST00000516527 94 ntBASIC2.09□□□□□ -2.07
VIMP08670 HSPE1P18-201ENST00000517602 280 ntBASIC2.09□□□□□ -2.07
VIMP08670 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.09□□□□□ -2.07
VIMP08670 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.09□□□□□ -2.07
VIMP08670 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.09□□□□□ -2.07
VIMP08670 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.09□□□□□ -2.07
VIMP08670 MIR3923-201ENST00000579521 83 ntBASIC2.09□□□□□ -2.07
VIMP08670 MIR3200-201ENST00000580767 85 ntBASIC2.09□□□□□ -2.07
VIMP08670 AC064807.4-201ENST00000607201 407 ntBASIC2.09□□□□□ -2.07
VIMP08670 AL359314.1-201ENST00000616913 261 ntBASIC2.09□□□□□ -2.07
VIMP08670 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms