Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 Y_RNA.516-201ENST00000384541 124 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 SNORA80E-201ENST00000384744 137 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 RNU2-48P-201ENST00000410694 191 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 SRIP2-201ENST00000428470 166 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.43□□□□□ -2.02
VPS28Q9UK41 AL137159.1-201ENST00000452808 512 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 U8.21-201ENST00000459536 136 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 AC145146.1-201ENST00000496370 254 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 SNORA31.16-201ENST00000516773 139 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 RNU6-612P-201ENST00000516909 102 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 SNORA31.25-201ENST00000517242 134 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 MTND1P35-201ENST00000526739 508 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 TRAV32-201ENST00000553993 340 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 AC233702.2-202ENST00000562547 291 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 AC022202.1-201ENST00000613515 211 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.43□□□□□ -2.02
VPS28Q9UK41 AP006437.1-201ENST00000641440 3685 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
VPS28Q9UK41 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
VPS28Q9UK41 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
VPS28Q9UK41 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.42□□□□□ -2.02
VPS28Q9UK41 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
VPS28Q9UK41 RNY4P14-201ENST00000363656 96 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 Y_RNA.256-201ENST00000364594 104 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 Y_RNA.504-201ENST00000384481 104 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 BTF3L4P2-201ENST00000392798 346 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 RNU4-53P-201ENST00000410828 140 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 MTCO1P21-201ENST00000416634 589 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 SNRPEP10-201ENST00000420249 274 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 UBE2V1P4-201ENST00000425374 344 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 IFNA20P-201ENST00000436840 528 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 HMGN2P26-201ENST00000463169 339 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 RPL39P5-202ENST00000512505 151 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 Y_RNA.665-201ENST00000516177 98 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 RNU6-965P-201ENST00000516721 96 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 AC107953.1-201ENST00000522216 297 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 AC021231.3-201ENST00000558497 370 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 SNORD53-201ENST00000579969 78 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 AC100830.2-201ENST00000581636 240 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.42□□□□□ -2.02
VPS28Q9UK41 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.42□□□□□ -2.02
VPS28Q9UK41 AC068944.2-201ENST00000610373 403 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 AL132822.1-201ENST00000617063 513 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 AL590808.1-201ENST00000618696 141 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 AC139792.2-201ENST00000624218 587 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 AC068137.4-201ENST00000638485 296 ntBASIC2.42□□□□□ -2.02
VPS28Q9UK41 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
VPS28Q9UK41 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.42□□□□□ -2.02
VPS28Q9UK41 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
VPS28Q9UK41 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
VPS28Q9UK41 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
VPS28Q9UK41 RNU4-12P-201ENST00000365233 139 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 Y_RNA.373-201ENST00000365600 103 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 Y_RNA.554-201ENST00000384672 102 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.41□□□□□ -2.02
VPS28Q9UK41 NDUFA5P4-201ENST00000436704 385 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.41□□□□□ -2.02
VPS28Q9UK41 GPM6BP3-201ENST00000442797 145 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.41□□□□□ -2.02
VPS28Q9UK41 AC107032.1-201ENST00000485945 480 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 AC114801.2-201ENST00000503825 781 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 AC091874.1-201ENST00000511402 339 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 RNU6-1332P-201ENST00000516666 104 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 MTND1P5-201ENST00000517906 940 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 SCOCP1-201ENST00000554676 349 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 MYL12BP1-201ENST00000569826 507 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 RPS3AP23-202ENST00000574601 686 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 MIR4529-201ENST00000578110 78 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 MIR3923-201ENST00000579521 83 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.41□□□□□ -2.02
VPS28Q9UK41 AC067747.1-201ENST00000608026 250 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 FAM157A-202ENST00000615155 405 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 AC016717.2-201ENST00000609089 5141 ntBASIC2.41□□□□□ -2.02
VPS28Q9UK41 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
VPS28Q9UK41 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
VPS28Q9UK41 RNU6-227P-201ENST00000362865 103 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 Y_RNA.450-201ENST00000384198 113 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 RNU6-301P-201ENST00000384277 107 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 Y_RNA.573-201ENST00000384763 105 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 SNORA40.19-201ENST00000390846 128 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 SNORA46.1-201ENST00000391069 153 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 HMGN2P39-201ENST00000398005 273 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 MIR450B-201ENST00000401182 78 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 MIR1294-201ENST00000408503 142 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 Y_RNA.615-201ENST00000410769 117 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.4□□□□□ -2.03
VPS28Q9UK41 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS28Q9UK41 RPL9P9-202ENST00000466501 579 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 AC025465.4-201ENST00000513422 638 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 RNA5SP281-201ENST00000516504 135 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 RNU6-567P-201ENST00000516746 107 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.4□□□□□ -2.03
VPS28Q9UK41 AC091544.4-201ENST00000555268 342 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 AC078899.2-201ENST00000595282 212 ntBASIC2.4□□□□□ -2.03
VPS28Q9UK41 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS28Q9UK41 AC009541.1-201ENST00000438279 2662 ntBASIC2.39□□□□□ -2.03
VPS28Q9UK41 SNORD113-7-201ENST00000363762 77 ntBASIC2.39□□□□□ -2.03
VPS28Q9UK41 RNU6-128P-201ENST00000383976 107 ntBASIC2.39□□□□□ -2.03
VPS28Q9UK41 RNU6-373P-201ENST00000411247 98 ntBASIC2.39□□□□□ -2.03
VPS28Q9UK41 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms