Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU1-75P-201ENST00000347264 129 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 RNU6-1010P-201ENST00000362757 107 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 RNU6-541P-201ENST00000384709 110 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 MIR32-201ENST00000384965 70 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 RN7SKP202-201ENST00000410439 330 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AC108059.2-201ENST00000434626 151 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 Z82188.1-201ENST00000436709 154 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 RPEP5-201ENST00000441137 268 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AC067942.3-201ENST00000512025 362 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 RNU6-408P-201ENST00000515910 100 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 RNU6-1114P-201ENST00000516022 107 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 RNU1-95P-201ENST00000516357 160 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 RNU1-128P-201ENST00000516704 160 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 RNU6-897P-201ENST00000517135 105 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 SNORA31.26-201ENST00000517250 137 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 MIR3922-201ENST00000585192 84 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 AC012493.2-201ENST00000595083 291 ntBASIC3.05□□□□□ -1.92
VSX1Q9NZR4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.05□□□□□ -1.92
VSX1Q9NZR4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 RNU1-64P-201ENST00000365443 163 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 Y_RNA.439-201ENST00000384119 94 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 Y_RNA.489-201ENST00000384410 101 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 SNORD78.2-201ENST00000391076 69 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AC126124.2-201ENST00000413542 321 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AC093578.1-201ENST00000415219 368 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 RPL23AP22-201ENST00000437556 453 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AC016700.2-201ENST00000446011 156 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 RBMY2UP-201ENST00000453474 324 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AC090517.1-201ENST00000569307 266 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AC125232.2-201ENST00000592457 143 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AL391813.1-201ENST00000603098 260 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 RAC1P9-201ENST00000604990 392 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AL359198.2-201ENST00000611836 194 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 uc_338.14-201ENST00000613162 166 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 AC012442.3-202ENST00000636742 206 ntBASIC3.04□□□□□ -1.92
VSX1Q9NZR4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
VSX1Q9NZR4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 Y_RNA.19-201ENST00000362462 99 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 RNU6-280P-201ENST00000364145 104 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 SNORA14A-201ENST00000364773 135 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 MIR147B-201ENST00000390185 80 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AL031121.1-201ENST00000406553 254 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AC012306.1-201ENST00000423267 114 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AL365496.1-201ENST00000426885 215 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 CBX3P6-201ENST00000430257 527 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 TOMM22P6-201ENST00000465035 409 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AF186996.7-201ENST00000492781 209 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AC025465.3-201ENST00000510570 311 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AC104619.4-201ENST00000510773 249 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 RNU2-53P-201ENST00000516257 147 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 RN7SKP272-201ENST00000516988 232 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 RNU6-1271P-201ENST00000517049 105 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 CYCSP23-201ENST00000519781 313 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AL356575.1-201ENST00000603008 283 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 CR392039.5-201ENST00000623201 510 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 AC009093.8-201ENST00000641769 292 ntBASIC3.03□□□□□ -1.92
VSX1Q9NZR4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
VSX1Q9NZR4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.02□□□□□ -1.93
VSX1Q9NZR4 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.02□□□□□ -1.93
VSX1Q9NZR4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.02□□□□□ -1.93
VSX1Q9NZR4 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.02□□□□□ -1.93
VSX1Q9NZR4 SNORD114-19-201ENST00000363072 75 ntBASIC3.02□□□□□ -1.93
VSX1Q9NZR4 Y_RNA.319-201ENST00000365138 92 ntBASIC3.02□□□□□ -1.93
VSX1Q9NZR4 RNU6-805P-201ENST00000365643 106 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms