Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MIR4698-201ENST00000577795 80 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 MIR4714-201ENST00000580728 77 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 AC005786.1-201ENST00000588553 154 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 AL353778.1-201ENST00000603149 408 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
USP42Q9H9J4 AC103706.2-201ENST00000638080 240 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 AC018630.2-201ENST00000534866 2403 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
USP42Q9H9J4 AL445523.1-201ENST00000451184 1362 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 AC100821.1-201ENST00000523153 2479 ntBASIC1.16□□□□□ -2.22
USP42Q9H9J4 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
USP42Q9H9J4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.16□□□□□ -2.22
USP42Q9H9J4 RNU6-527P-201ENST00000363425 104 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 Y_RNA.302-201ENST00000364997 102 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 RNU6-906P-201ENST00000384700 70 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 MIR216A-201ENST00000385063 110 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 RNU2-7P-201ENST00000410794 178 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 AL031779.1-201ENST00000415663 330 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 C1DP2-201ENST00000418167 426 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.15□□□□□ -2.22
USP42Q9H9J4 MTND1P32-201ENST00000433043 938 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 AL022238.1-201ENST00000442557 355 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 NDUFB1P2-201ENST00000449477 176 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC1.15□□□□□ -2.22
USP42Q9H9J4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.15□□□□□ -2.22
USP42Q9H9J4 RNU5F-2P-201ENST00000516066 82 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 RNU7-51P-201ENST00000516560 62 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.15□□□□□ -2.22
USP42Q9H9J4 AC144521.1-201ENST00000607148 956 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 AC108706.1-201ENST00000611053 297 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 AL607023.1-201ENST00000620045 248 ntBASIC1.15□□□□□ -2.22
USP42Q9H9J4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.15□□□□□ -2.22
USP42Q9H9J4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
USP42Q9H9J4 LINC02555-201ENST00000563933 1951 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 RNU6-112P-201ENST00000363599 104 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 RNY1P4-201ENST00000384595 115 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 MIR544A-201ENST00000384855 91 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 RNA5SP111-201ENST00000411386 101 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 MTCO2P23-201ENST00000425216 680 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 AL591043.1-201ENST00000432461 424 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 AC084290.1-201ENST00000434995 374 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 ZNF736P1Y-201ENST00000440402 1276 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.15□□□□□ -2.23
USP42Q9H9J4 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.15□□□□□ -2.23
USP42Q9H9J4 AP000797.1-201ENST00000478870 387 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 AC097473.1-201ENST00000508142 408 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.15□□□□□ -2.23
USP42Q9H9J4 RNU6-123P-201ENST00000516163 102 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC1.15□□□□□ -2.23
USP42Q9H9J4 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC1.15□□□□□ -2.23
USP42Q9H9J4 MIR3937-201ENST00000580135 106 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC1.15□□□□□ -2.23
USP42Q9H9J4 AL355802.3-201ENST00000607571 545 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 AC092106.3-201ENST00000611308 722 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 AP002782.1-201ENST00000623107 614 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 AC010608.3-201ENST00000625048 527 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 AL445984.1-201ENST00000637834 659 ntBASIC1.15□□□□□ -2.23
USP42Q9H9J4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.14□□□□□ -2.23
USP42Q9H9J4 SNORD1A-201ENST00000364968 72 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 SNORA12-201ENST00000391162 147 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.14□□□□□ -2.23
USP42Q9H9J4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
USP42Q9H9J4 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.14□□□□□ -2.23
USP42Q9H9J4 MTND2P4-201ENST00000445034 1004 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC1.14□□□□□ -2.23
USP42Q9H9J4 AL049829.1-201ENST00000465411 156 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 UBE2V1P12-201ENST00000503954 474 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 AC079140.2-201ENST00000506193 142 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 AC022616.6-201ENST00000520479 119 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.14□□□□□ -2.23
USP42Q9H9J4 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.14□□□□□ -2.23
USP42Q9H9J4 TRAV32-201ENST00000553993 340 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.14□□□□□ -2.23
USP42Q9H9J4 ZNF519P3-201ENST00000557158 1032 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 AC091135.1-201ENST00000585943 307 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 AC090578.1-201ENST00000604955 591 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 AL159153.1-201ENST00000619688 317 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 OR4G3P-201ENST00000633500 913 ntBASIC1.14□□□□□ -2.23
USP42Q9H9J4 AC068700.1-201ENST00000565862 3754 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 AC121333.1-201ENST00000567488 2709 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 RNU6-660P-201ENST00000364566 109 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 RNU6-809P-201ENST00000384461 107 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 MIR578-201ENST00000384828 96 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 RPL22P18-201ENST00000417197 377 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 AL589872.1-201ENST00000426602 288 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.13□□□□□ -2.23
USP42Q9H9J4 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.13□□□□□ -2.23
USP42Q9H9J4 SNRPGP7-201ENST00000469016 106 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC1.13□□□□□ -2.23
USP42Q9H9J4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.13□□□□□ -2.23
USP42Q9H9J4 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.13□□□□□ -2.23
USP42Q9H9J4 AP002453.2-201ENST00000533503 320 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC1.13□□□□□ -2.23
USP42Q9H9J4 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC1.13□□□□□ -2.23
USP42Q9H9J4 SNORA77B-201ENST00000578179 125 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 AC112187.2-201ENST00000604345 283 ntBASIC1.13□□□□□ -2.23
USP42Q9H9J4 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms