Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 RNA5SP119-201ENST00000362715 117 ntBASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 FO393413.1-201ENST00000402892 195 ntBASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 MIR1294-201ENST00000408503 142 ntBASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 SNORD12B-201ENST00000410433 91 ntBASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 RN7SKP220-201ENST00000410611 288 ntBASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 RNU2-63P-201ENST00000410792 194 ntBASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 RPL21P2-201ENST00000440049 481 ntBASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 RNU1-95P-201ENST00000516357 160 ntBASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 RNU1-128P-201ENST00000516704 160 ntBASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 AC099778.2-201ENST00000610904 211 ntBASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TRAIPQ9BWF2 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.21□□□□□ -1.73
TRAIPQ9BWF2 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
TRAIPQ9BWF2 RNU6-238P-201ENST00000363313 106 ntBASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 RNU6-926P-201ENST00000384075 107 ntBASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 RNU6-793P-201ENST00000384233 104 ntBASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 RNU6-397P-201ENST00000516226 104 ntBASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 RNY3P15-201ENST00000516297 97 ntBASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 Y_RNA.683-201ENST00000516508 93 ntBASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 MIR5006-201ENST00000583027 110 ntBASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TRAIPQ9BWF2 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 RNU6-283P-201ENST00000364788 107 ntBASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 RNU6-196P-201ENST00000384315 107 ntBASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 RNU1-89P-201ENST00000384592 164 ntBASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 RNU6-1001P-201ENST00000411265 100 ntBASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 TRIAP1P1-201ENST00000427062 225 ntBASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 MIR4659A-201ENST00000580269 81 ntBASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 MIR486-1-201ENST00000612171 68 ntBASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 AL449363.1-201ENST00000617815 186 ntBASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 IPO8P1-201ENST00000455509 3109 ntBASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 AL355596.1-201ENST00000565399 3996 ntBASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
TRAIPQ9BWF2 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 RNU1-62P-201ENST00000362599 164 ntBASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 Y_RNA.133-201ENST00000363428 110 ntBASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 Y_RNA.144-201ENST00000363521 113 ntBASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 RNA5SP322-201ENST00000363617 119 ntBASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 MIR549A-201ENST00000385268 96 ntBASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 CBX3P6-201ENST00000430257 527 ntBASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 RPEP5-201ENST00000441137 268 ntBASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 AC010655.3-201ENST00000478818 450 ntBASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 AC125232.2-201ENST00000592457 143 ntBASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 AC240442.1-201ENST00000616055 283 ntBASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.19□□□□□ -1.74
TRAIPQ9BWF2 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 RNA5SP361-201ENST00000362686 118 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 Y_RNA.47-201ENST00000362697 108 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 Y_RNA.276-201ENST00000364732 109 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 SNORA18.2-201ENST00000383865 132 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 SNORA5A-201ENST00000384111 134 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 Y_RNA.458-201ENST00000384240 102 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 RNA5SP213-201ENST00000391031 106 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 AC004386.2-201ENST00000441858 148 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 IPO7P1-201ENST00000442031 636 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 AC010095.1-201ENST00000443543 144 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 snoU13.22-201ENST00000459428 104 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 AC010469.2-201ENST00000496412 480 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 MTCO2P24-201ENST00000515611 426 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 RNU6-1012P-201ENST00000516606 109 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 RNU2-44P-201ENST00000516795 194 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 AL713866.2-201ENST00000603579 219 ntBASIC4.18□□□□□ -1.74
TRAIPQ9BWF2 AC092628.2-201ENST00000622492 339 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms