Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-220P-201ENST00000390919 107 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AP000275.1-201ENST00000411943 390 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 RPL30P16-201ENST00000419341 429 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AL031274.1-201ENST00000450334 232 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AC112771.1-201ENST00000463581 102 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AK3P2-201ENST00000507976 429 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AC092436.3-201ENST00000511788 257 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AP000889.2-201ENST00000532684 490 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AP000763.2-201ENST00000540641 163 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 CPDP1-201ENST00000579660 283 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 MIR3199-1-201ENST00000582434 88 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AC073410.2-201ENST00000603240 332 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 HMGB1P24-202ENST00000615653 685 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AC009033.1-201ENST00000624279 431 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 SNORA67.1-201ENST00000364749 141 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 RNU6-1013P-201ENST00000384180 107 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 MIR186-201ENST00000384988 86 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 MIR95-201ENST00000385072 81 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 CBX3P9-201ENST00000402326 552 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 RNU6-1148P-201ENST00000410992 104 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 RNU6-293P-201ENST00000411259 106 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC003685.2-201ENST00000422795 395 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AIMP1P2-201ENST00000425294 312 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 RPL23AP95-201ENST00000426806 265 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC078809.1-201ENST00000427601 140 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 RPL39P29-201ENST00000447779 157 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AP000705.1-201ENST00000454567 350 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 RNU7-26P-201ENST00000458980 63 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 RPL30P1-201ENST00000488676 339 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC022447.4-201ENST00000504053 364 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 PRDX4P1-201ENST00000507189 574 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC046134.1-201ENST00000514454 666 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 RNU6-256P-201ENST00000516747 97 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC025423.5-201ENST00000550230 219 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC026371.1-201ENST00000551867 419 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC103996.1-201ENST00000555468 102 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC023824.2-201ENST00000566185 400 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 MIR3672-201ENST00000584290 82 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC091135.1-201ENST00000585943 307 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AP001836.1-201ENST00000604675 523 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 ELOCP5-201ENST00000604924 333 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 RBM11P1-201ENST00000604951 799 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 AC064836.2-201ENST00000609491 462 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 MIR6873-201ENST00000622788 63 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 DUXAP9-208ENST00000622815 614 ntBASIC2.28□□□□□ -2.04
CCDC3Q9BQI4 MTND4P23-201ENST00000447723 1363 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 RNU1-72P-201ENST00000362976 153 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 SNORD32A-201ENST00000364805 84 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 RNU6-1283P-201ENST00000365314 105 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 RNU6-831P-201ENST00000384548 107 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 SNORD73A-201ENST00000386062 65 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AL133475.1-201ENST00000404414 305 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 RN7SKP61-201ENST00000410642 295 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AC138623.1-201ENST00000418060 216 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AL133396.1-201ENST00000432048 687 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 USP9YP28-201ENST00000435142 589 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AC096638.1-201ENST00000444678 216 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AL121594.1-201ENST00000475906 575 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AC008628.2-201ENST00000502605 298 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AC114801.2-201ENST00000503825 781 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AF213884.2-201ENST00000510417 903 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 SMURF2P1-201ENST00000514992 481 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 MIR5571-201ENST00000577998 113 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AP001094.1-201ENST00000579805 193 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 MIR4524B-201ENST00000581569 115 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AL356575.1-201ENST00000603008 283 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AL136221.1-201ENST00000621449 509 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AC100810.6-201ENST00000638068 285 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 AC241585.2-209ENST00000638217 143 ntBASIC2.27□□□□□ -2.05
CCDC3Q9BQI4 MIR6073-201ENST00000352083 89 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 Y_RNA.86-201ENST00000363020 111 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 RNU6-1210P-201ENST00000363775 107 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 Y_RNA.279-201ENST00000364763 95 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 SNORD116-11-201ENST00000383882 92 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 AL356776.1-201ENST00000406574 447 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 AC008267.5-201ENST00000424928 265 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 IFNA20P-201ENST00000436840 528 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 RPL7P12-201ENST00000446719 750 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 RNU6-329P-201ENST00000459618 107 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 MTCO1P29-201ENST00000496868 288 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 RNU6-237P-201ENST00000515985 71 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 RNU6-1332P-201ENST00000516666 104 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms