Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 MIR4444-1-201ENST00000581696 74 ntBASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 MIR4444-2-201ENST00000584390 74 ntBASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 AC025946.2-201ENST00000603398 234 ntBASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 SNRPGP20-201ENST00000604477 205 ntBASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 AC112200.1-201ENST00000625015 234 ntBASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 MIR2052-201ENST00000636055 55 ntBASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
NPAS3Q8IXF0 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 AC005332.5-201ENST00000591222 2919 ntBASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 MIR195-201ENST00000385194 87 ntBASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 SNORA48.5-201ENST00000391143 135 ntBASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 AC012306.1-201ENST00000423267 114 ntBASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 RNA5SP246-201ENST00000458909 119 ntBASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 RNU6-1256P-201ENST00000516539 103 ntBASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 RNU6-504P-201ENST00000516568 104 ntBASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 IGLL4P-201ENST00000614590 133 ntBASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.41□□□□□ -1.7
NPAS3Q8IXF0 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
NPAS3Q8IXF0 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.4□□□□□ -1.7
NPAS3Q8IXF0 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.4□□□□□ -1.7
NPAS3Q8IXF0 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
NPAS3Q8IXF0 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
NPAS3Q8IXF0 SNORD87-201ENST00000364849 89 ntBASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 RNU6-1276P-201ENST00000365372 104 ntBASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 Y_RNA.432-201ENST00000384087 111 ntBASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 SNORA18.3-201ENST00000384122 132 ntBASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 CBX3P9-201ENST00000402326 552 ntBASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 RNU2-68P-201ENST00000410878 191 ntBASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 RNA5SP154-201ENST00000516193 111 ntBASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
NPAS3Q8IXF0 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 MAPK10-304ENST00000641341 3984 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 RNU6-242P-201ENST00000384359 107 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 MIR1278-201ENST00000408753 81 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 Z85995.1-201ENST00000415547 335 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 AL358232.1-201ENST00000448030 501 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 AC108022.1-201ENST00000493466 478 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 RNU2-13P-201ENST00000515909 113 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 RNA5SP360-201ENST00000516555 118 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 RNA5SP143-201ENST00000516936 115 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 RNU1-104P-201ENST00000517280 175 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 IFITM8P-201ENST00000522529 394 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 RPL23AP97-201ENST00000568955 471 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 AC011471.1-201ENST00000585766 187 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 AC019159.1-201ENST00000605094 187 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 AL356157.2-201ENST00000605122 111 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 MIR548AY-201ENST00000617669 107 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 Y_RNA.818-201ENST00000618813 71 ntBASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
NPAS3Q8IXF0 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 RNU1-62P-201ENST00000362599 164 ntBASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 Y_RNA.52-201ENST00000362760 96 ntBASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 RNU6-787P-201ENST00000384032 107 ntBASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 RNU6-279P-201ENST00000391297 101 ntBASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 AC244670.1-201ENST00000436879 112 ntBASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 AC007969.2-201ENST00000441891 191 ntBASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 RNU6-893P-201ENST00000458841 100 ntBASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 MRPS36P2-201ENST00000512569 299 ntBASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 RNU6-857P-201ENST00000515893 110 ntBASIC4.38□□□□□ -1.71
NPAS3Q8IXF0 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 910 ms